| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2068 |
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| Symbol | |
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| ID | 7386878 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 1694076 |
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| End bp | 1696718 |
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| Gene Length | 2643 bp |
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| Protein Length | 880 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643651287 |
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| Product | OmpA family protein |
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| Protein accession | YP_002549482 |
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| Protein GI | 222148525 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTCAAC TGCGAGGAAA ACCCATGGCA GTACAATCCA GGATAACGGC ATCGGTGCTG
ATTGCACTTG CAAATCTCGT TGCCGCACCA TCCTTTGCCG CCTCTTATAC TTCCGACACT
CTCGCACAAG GCCAGGATAT TGCCGGCCGG ACGCGGGCTA TGTCGGCTGG CACAACACTT
GACGGTCACG GGATCGTGCT GATGGCCCAG GCCGAGCCGC CGCCGGAAGA GCTGCCGAAG
CAGAAAAAAA AGGGGCCGCC GGAAGAAGGC AAGCCGGGTG AGGAGCGCCC ACCTGAGGCC
GCAAAACCGC CGAAGGAAGA GAAACGCCCT GAAGCGCCAC CCGCTCGCAA CGAAGCCCCG
CCGCCTGCCC GAGAAGAAGC GCCTGCTCAA CAGACCAGGC CAAAGCCTCC GGCAGCAATG
GAAGCTCCTT CCGCTGAGCC GCCACCGCAG AAAAAACATG AAAAGCCGAT GGAGCCAGCG
ATAGAGCCAC AAAAGGCTCC CCCGCCGCCG AAAATGGAGC CGCCGAAAAT GGCTGAGCCT
CCAGCTGAAC CGCAAGAAAA ACCGGTGAAG CCGAAGAAGA ACGAAGCTCA ACCGCCTATG
CCTCCTGGCG CTGAGCCGAA AGGCGCACCT ACGCCGCCCG TTGGTGATCG CAGCATCGTA
CCTCAGCCTG GTACGCCGCA GCCCGGTACG CCAAAGGGCG AAGCGCAGCC CGTGAAACCG
GAAGACCAGA GACCGGCTGG CAAGAAGCCC GTTGCGAACC CTGCTGCTCA AAATCCGGCT
GAACAAGTTC CGGCTGGAAA AGCCCCGGAA GGCCAGAAGC GTCCAAATCC GCAAGCGGAA
GGTCAAGCCC CAGTAGGTCA AGCACCGGTA GGCCAACCAC AGGAAGGCCA AAAGCCGCAA
GCTCCACGGC CAGCCGAACC GGAACCGCAA GCCAAGCCCG AACCCAAAAC GACACCTGAA
CCTCAAGTAA AGCCGGTTGC GCCTAACGCG CCCGCTGAGC CCCCTTCGGG CAATCCGCCA
GCAGGCAAGC CTCCAGCGCC TCCGGTTGCC GAACCGTCGT TGCCGGGTGG GCCGAAGCCG
CCTGCCGAGG CGCCGGGCGC ACCGAAGGCG CCGCAACCGC CCGTTCAGCC TGGCGCGCCT
GCCGCACCAC GTGCCGATGC TCCCATGCCA CCACCGCCCG GTCCCGGCAA TGATGAGGCT
GGTAAGCCTC GCCCGGCGCT GTTGCCGCCA ATGAACGCCA CACAGTCTCG TGAGCAAGGT
GGTCTTCCTG GCCAAGGCGG AAAGGGCGGG GCTCCTGGTC TGGGTGGTCA AGCCGGACAG
AATGGACAGC CGGGTCAGCC TGGACAACCC GGTCGGCCGG GAGCTCAGGG AGCTCCGGGA
GCGCCTGATA ATGCCGTGAG TGATCAGCAA TTGCGTCCGC AATTGCCACC GCAGGAACAG
GCACCGTTTA CGCCGAAGGA ATTGCAGCGT CTGCGGGCTT TGGCTGACAA GCCGTCGCAG
ACCAATGAAA CCATTATCCT GCCGGTGGAT CGCGGTGCGC CCGTGCTTGA CAGCGACAAG
GACAATAACT GGCGTCGTGG CATGTCCGAA GATCAGTTGC GCCGTCTGCG TCAGCAGGCC
GATGACCAGG ATCGCTACGC TATCCCCGAA AGCGATGCTC AGGCTCAGCA GGACTATTAC
GGCAACCGTC CGCGCCCGGA TATCCGCATC GAATCCATCG ATCAATATCA GGGCCGCCGT
CTGCGCGATC AGCCGCAATT CACCTACCCT GACGATGTCC GCGTCGAGCG CAGCTTCGAC
GATGACCGCG AGGTGATGGA TTATGGTGGC CAGATCGTCA TCCGCAGCGA CGACAACCGC
CGCTTTGCCC AATATGGCCG CCCGCCGGTC TATGAGCAGG TGGATCACCA GCGTGTCCGC
ATCACCGTCT TCAAGGAAAA CGGCGATCGG ATTGTCAGCC TGCGCAATCG CTATGGTCAG
TTGATCCAGC GGTCGCGCAT TGATGCCAAT GGCGAGGAAT ATGTGCTGTT CTACTCGCCG
GACCTCTACA GCGCCGACGA CGACCGGCGC GTTGCCTACC GTGATCCGGG TGCGGATCTG
CCCCCGATGC GCCTGCGGGT GCCGCTCAAT GACTACATCA TCGATGTCGG CAGTTCGCCT
GACCGCGATT ATTACAAGTT CATGGAGCAG CCGCCGGTAG AACCCGTCGA GCGTGTCTAT
ACGATTGACG AGGTTCGCAA TTCCGCCCGT ATCCGCGACA AGATGCGCCG TATCGACCTT
GATACCGTGA CGTTTGCGAC TGGTAGCGCC GATATTTCCA TGAACCAGGC TGGTACCTTG
AAAAAGGTTG CGGATGCCAT TGTACGGGTG TTGAAGGACG ATCCGGGCGA AACCTTCCTG
ATCGAGGGCC ATACCGATGC TGTCGGTTCG GCTGAGTCAA ACCTGGTGCT GTCAGACCGC
AGAGCTGAGT CGGTCGCCAA TGTCCTGACC CAGGTTTACG GTATTCCACC GGAAAACATG
ATCACGCAGG GCTATGGCGA GCAGTTCCTC AAGGTGATGA CCTATGGGCC GGAACAGCAG
AACCGGCGCG TCACCGTTCG CCGTGTCACT CCGCTGGTGC GGCCGGTGCA GGCGGCACGC
TGA
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| Protein sequence | MPQLRGKPMA VQSRITASVL IALANLVAAP SFAASYTSDT LAQGQDIAGR TRAMSAGTTL
DGHGIVLMAQ AEPPPEELPK QKKKGPPEEG KPGEERPPEA AKPPKEEKRP EAPPARNEAP
PPAREEAPAQ QTRPKPPAAM EAPSAEPPPQ KKHEKPMEPA IEPQKAPPPP KMEPPKMAEP
PAEPQEKPVK PKKNEAQPPM PPGAEPKGAP TPPVGDRSIV PQPGTPQPGT PKGEAQPVKP
EDQRPAGKKP VANPAAQNPA EQVPAGKAPE GQKRPNPQAE GQAPVGQAPV GQPQEGQKPQ
APRPAEPEPQ AKPEPKTTPE PQVKPVAPNA PAEPPSGNPP AGKPPAPPVA EPSLPGGPKP
PAEAPGAPKA PQPPVQPGAP AAPRADAPMP PPPGPGNDEA GKPRPALLPP MNATQSREQG
GLPGQGGKGG APGLGGQAGQ NGQPGQPGQP GRPGAQGAPG APDNAVSDQQ LRPQLPPQEQ
APFTPKELQR LRALADKPSQ TNETIILPVD RGAPVLDSDK DNNWRRGMSE DQLRRLRQQA
DDQDRYAIPE SDAQAQQDYY GNRPRPDIRI ESIDQYQGRR LRDQPQFTYP DDVRVERSFD
DDREVMDYGG QIVIRSDDNR RFAQYGRPPV YEQVDHQRVR ITVFKENGDR IVSLRNRYGQ
LIQRSRIDAN GEEYVLFYSP DLYSADDDRR VAYRDPGADL PPMRLRVPLN DYIIDVGSSP
DRDYYKFMEQ PPVEPVERVY TIDEVRNSAR IRDKMRRIDL DTVTFATGSA DISMNQAGTL
KKVADAIVRV LKDDPGETFL IEGHTDAVGS AESNLVLSDR RAESVANVLT QVYGIPPENM
ITQGYGEQFL KVMTYGPEQQ NRRVTVRRVT PLVRPVQAAR
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