| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2066 |
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| Symbol | |
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| ID | 7386877 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 1693035 |
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| End bp | 1693811 |
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| Gene Length | 777 bp |
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| Protein Length | 258 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 643651286 |
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| Product | ABC transporter substrate binding protein (amino acid) |
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| Protein accession | YP_002549481 |
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| Protein GI | 222148524 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | [TIGR01096] lysine-arginine-ornithine-binding periplasmic protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTATCT CGACCCGTTT TCTGGCCGCC GCCTCCCTTA CTGCCCTGTC ATTGTTTGCC
GGTGGCGCCA TGGCTGAAGA AAAGCTCGTT ATCGGTACGG AAGGTGCCTA TCCGCCCTTC
AACAGCCTTG AAGCCGACGG TTCGCTGACC GGTTTCGACA TCGATATCGC CAAGGCGCTT
TGCGAAGAAA TGAAGGTGAC ATGCACCTTC AAGACCAATG ATTGGGATGG CATCATCCCC
GCCTTGCAGG CGAAGAAATT CGACGCCATC GTCGCGTCGA TGTCGATCAC CCCCGAGCGT
CTGGAAAAGG TGGATTTCTC CAAGAAATAC TACAATACTC CTCCAGCCAT CGCCGTGCCG
AAGGATTCGC CTGCCAAGAG CGTCGAAGAC CTGAAGGGCA AGACCATCGG CGCGCAAACC
TCCACATCCC ATGCCAATTA TGCCGAAAAG CATATGCCTG ATTCGCAGTT GAAGCTTTAC
CCGACAGCCG ACGAATACAA GCTGGACATC ACCAATGGCC GTATCGATGC TGTCATCGAC
GATGTCGTGG TGCTGACGCA ATGGATCAAA AGCGATGCGG GCACCTGCTG CAAGATCCTG
ACGCCACTGC CAATCGATCC TGTGATCAAC GGCGAGGGTG CTGGCATTGC CGTTCGCAAG
GGCGAAACCG CTCTGGCTGA CCGCTTCACC AAGGCCATCG CCGTTATTCG CGCCAATGGC
ACCTACCAGA AGATCAATGC CAAATATTTC GATTTTGACG TTTACGGCGA CAAATAA
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| Protein sequence | MRISTRFLAA ASLTALSLFA GGAMAEEKLV IGTEGAYPPF NSLEADGSLT GFDIDIAKAL
CEEMKVTCTF KTNDWDGIIP ALQAKKFDAI VASMSITPER LEKVDFSKKY YNTPPAIAVP
KDSPAKSVED LKGKTIGAQT STSHANYAEK HMPDSQLKLY PTADEYKLDI TNGRIDAVID
DVVVLTQWIK SDAGTCCKIL TPLPIDPVIN GEGAGIAVRK GETALADRFT KAIAVIRANG
TYQKINAKYF DFDVYGDK
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