Gene Avi_2054 details

Gene Information

• Locus tag: Avi_2054
• ID: 7386869
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 1686607
• End bp: 1687242
• Gene Length: 636 bp
• Protein Length: 211 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 643651278
• Product: hypothetical protein
• Protein accession: YP_002549473
• Protein GI: 222148516
• COG category: [L] Replication, recombination and repair
• COG ID: [COG1573] Uracil-DNA glycosylase
• TIGRFAM ID: [TIGR00758] uracil-DNA glycosylase, family 4

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.468263
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGACCGTGA GCTTGCCGAG GGATCTCAAA GGATTGCGCG CCGCCATTCA CGCCTGCCGG 
ATCTGTCGAG ATTGTCCGAC GCAGGTAACG GCCCTGCCGC ATGAGCCCAG GCCCGTTGTT 
GTCCTGTCGT CGACAGCTCG CATTCTGATT GCCGGGCAGG CACCGGGCAA GCGGGTGCAT 
GAAACCGGAC TGCCTTTCAA TGATGCCTCC GGCGATCGGC TGCGGCAATG GCTGGGCGTG 
GATCGAGAGG CGTTTTACGA TAGCCGCAAC TTTGCCATCC TGCCGATGGG CTTCTGCTTT 
CCGGGATACG ACGCCAGCGG CCACGACCTG CCGCCCCGGC GCGAATGCGC GCCCCATTGG 
CGGGAAGCGG CCATGGAGGT CATGCCTCAA GTGGAACTGG TGCTTGCCAT CGGCCAATAT 
GCGCAACGCT GGCATATGTG CGACCTGCGA AAGCCAACCT TGCATGCCAC GGTGGAAAGC 
TGGCGAGAAT CGTTTTTTAC CAACCGGCCA GGTCCGAAGA TTTTGCCGCT GCCGCATCCC 
AGTTGGCGAA ACAGCGGTTG GCTGCGCCGC AATCCGTGGT TTGAGGCAGA ATTGCTACCT 
GTCTTGAAAA AGCAAGTGGA TCACTGTCTG CGGTGA 

 

Protein sequence

MTVSLPRDLK GLRAAIHACR ICRDCPTQVT ALPHEPRPVV VLSSTARILI AGQAPGKRVH 
ETGLPFNDAS GDRLRQWLGV DREAFYDSRN FAILPMGFCF PGYDASGHDL PPRRECAPHW 
REAAMEVMPQ VELVLAIGQY AQRWHMCDLR KPTLHATVES WRESFFTNRP GPKILPLPHP 
SWRNSGWLRR NPWFEAELLP VLKKQVDHCL R