Gene Avi_2024 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_2024 
Symbol 
ID7386846 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand- 
Start bp1663630 
End bp1664217 
Gene Length588 bp 
Protein Length195 aa 
Translation table11 
GC content54% 
IMG OID643651254 
Producthypothetical protein 
Protein accessionYP_002549450 
Protein GI222148493 
COG category[R] General function prediction only 
COG ID[COG2823] Predicted periplasmic or secreted lipoprotein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones7 
Plasmid unclonability p-value0.376861 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCTGGA ATCCCCGGAC TACCGGGGAT GATATGAACC AAATCAATCC TGAAACGTTT 
ATCCAAAAGA AAAAACCAGG AGAACGTGTG ATGATTTATG CCAAGCATGG AAACGCTGCA 
TCCACCGAAG ACGAATTGCG GGACCTGGAA GAGCGCGATA TCAACGACGG CTGGCCTTAT 
TCCGATACAC CGGCAGCAGC CTCGGACGCG CCGGAAAATC GTGCTTACGG AGAGACCGCT 
GGTAATTTCG ACCGTGATAC CAATGGCGGC TACCGAATCG ATACGGTCGA GGCCGATGGT 
GAAGAAAAGC CATTGAAGGA CGGTTTGAGC CCCGCCACCA TCGGTCGTGA AGACAGCGAT 
GACATTGAAA GCCGCATTGC CGAGCGGTTC GAGGCAGTCG ATGACATGGT GCTCGACAAC 
ATCGAAATCA GCGTCGATGG CCATACGGCA ACTTTGAGCG GCATGGTTGA TACCAATGAA 
GAACTGCGGA TGGCGTCGCG TTTGGCACTC AGCGTTCCCG GTGTTCGTCA TGTCATCAAC 
GAGATCGAAG CCATGGGGGT CGATGCCCAT CAGCCCGACG AGGACTGA
 
Protein sequence
MAWNPRTTGD DMNQINPETF IQKKKPGERV MIYAKHGNAA STEDELRDLE ERDINDGWPY 
SDTPAAASDA PENRAYGETA GNFDRDTNGG YRIDTVEADG EEKPLKDGLS PATIGREDSD 
DIESRIAERF EAVDDMVLDN IEISVDGHTA TLSGMVDTNE ELRMASRLAL SVPGVRHVIN 
EIEAMGVDAH QPDED