Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_2018 |
Symbol | cobT |
ID | 7386841 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 1659670 |
End bp | 1660692 |
Gene Length | 1023 bp |
Protein Length | 340 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 643651249 |
Product | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase |
Protein accession | YP_002549445 |
Protein GI | 222148488 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG2038] NaMN:DMB phosphoribosyltransferase |
TIGRFAM ID | [TIGR03160] nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.158688 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGTGTAA CCGGCCTGCC GTTTGACGAT TTCCGAGTGC TGCTGCGCGA TTTGCCAGGG CCTGACAGCC AGGCGCTAGT GGCGGCCCGC GACCGCGACC GTCAATTGAC CAAGCCGCCG GGCTCGCTTG GCCGGTTGGA AGAAATCGCC ATGTGGCTTG CCGCCTGGAG TGGCCGTGCG CCAGCGGTGA ACCGTCCACT GGTGGCGATC TTTGCTGGCA ATCACGGCGT AGCCAGGCAT GGTATCACGC CGTTTCCATC TTCCGTCACC CAGCAGATGG TGGAGAATTT CGCAGCCGGT GGGGCGGCGA TCAACCAGAT CTGCGTTGCC CATGATCTCG GATTGAAGAT TTTCGATCTG GCGCTGGATT ATCCGACTGG CGATATTACC GTCGAGCCGG CTCTGTCGGA GCGTGATTGT GCGGCCACCA TGGCCTTCGG CATGGAAGCG ATCGCCGGTG GCACGGATCT GCTGTGCCTT GGCGAAATGG GGATTGGCAA TACGACCATT GCCGCAGCAA TCAACCTGGC GCTTTACGGC GGTTCGGCCG AGGACTGGGT CGGGCCTGGC ACCGGCTCGC AAGGCGAAAT GCTGGAGCGC AAGATTGCTG TGGTCAAGCA GGCGGTTGAG TTTCACCGCG ATCACCTTTC CGATCCGCTG GAAGTGATGC GCCGTCTGGG AGGACGCGAA ATCGCCGCCA TGGCAGGTGC CATTCTTGCA GCGCGAATGG AGCGTATTCC GGTGCTGATC GATGGCTATG TGGCGACGGC TGCCGCTGCC CTGCTGAAAG CTGCTAATCC CTCGGCGCTC GACCATTGCC TGATCGGCCA TGTCTCGGCG GAGCCGGGGC ATTTGAAGGC GATCGACAAG CTGGGCAAGA CGCCGCTTCT GGCGCTTGGC ATGCGGCTGG GTGAGGGGAC GGGTGCCGCC CTTGCCGCTG GCATCGTCAA GGCGGCTGCG GCCTCCCATA CGGGCATGGC GACCTTCGAA CAGGCCGGCG TGACCAATGC TGGCACCCAT TGA
|
Protein sequence | MSVTGLPFDD FRVLLRDLPG PDSQALVAAR DRDRQLTKPP GSLGRLEEIA MWLAAWSGRA PAVNRPLVAI FAGNHGVARH GITPFPSSVT QQMVENFAAG GAAINQICVA HDLGLKIFDL ALDYPTGDIT VEPALSERDC AATMAFGMEA IAGGTDLLCL GEMGIGNTTI AAAINLALYG GSAEDWVGPG TGSQGEMLER KIAVVKQAVE FHRDHLSDPL EVMRRLGGRE IAAMAGAILA ARMERIPVLI DGYVATAAAA LLKAANPSAL DHCLIGHVSA EPGHLKAIDK LGKTPLLALG MRLGEGTGAA LAAGIVKAAA ASHTGMATFE QAGVTNAGTH
|
| |