| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2013 |
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| Symbol | |
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| ID | 7387969 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 1657659 |
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| End bp | 1658366 |
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| Gene Length | 708 bp |
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| Protein Length | 235 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643651246 |
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| Product | hypothetical protein |
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| Protein accession | YP_002549442 |
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| Protein GI | 222148485 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3577] Predicted aspartyl protease |
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| TIGRFAM ID | [TIGR02281] clan AA aspartic protease, TIGR02281 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.620932 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAGCTCG GTGGGTTTGG CATTGTCATC GGCATCCTGC TCGCAGGAAC TGCGGTTTTA
ATCATCAACC GCGATAGCGG CCAGAGCTTC GGCATGGATA ATGATGACTT CGCCCGTGTC
GTTACCCTTC TGCCCTTTGC GCTCATGCTT TCGGCAGGCA TTGTCGCCAG CCGCCACAAC
CTGGGCCAGA ACCTGCGATT TGCCGCCGCC TGGGTGCTCA TCGCGCTGAT CCTCGTCACC
GGCTATATCT ACCGTAACGA TGCGGCTTCC GTCGCAGACC GGGTGCTGGC GGGACTGGTA
CCGGGCCGTG CCGTCGTCAC CACGACCGGC GATGGCCAGA GCCAACTCGT GTTGCAAAGA
GGCTCCTCCG GACATTTTTC GGCAACTGTC AGCATTAACG GTGTCGATAT CCCGATGATG
ATCGATACCG GAGCCAGCGC CGTGGTGCTG CGGGCCGAAG ATGCCGCCAG CATCGGCATC
AATGTTGATG ACTTGAACTA TAGCGTCACC GTCAGCACCG CCAATGGCGA GGCCCTGGCC
TCCCCCTTGC GCCTACGGCA GGTGGCCATT GGCCCCGTAA TCCGGGAAAA TGTCCGCGCC
CTGATCACCC AGCCGGGCCG AATGGATGGC AGCCTGCTCG GTATGAGTTT TCTCTCGACG
CTAGACAGCA TCCAGATCCA CGGCGACGAA CTGCGCCTCA CTGACTAA
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| Protein sequence | MKLGGFGIVI GILLAGTAVL IINRDSGQSF GMDNDDFARV VTLLPFALML SAGIVASRHN
LGQNLRFAAA WVLIALILVT GYIYRNDAAS VADRVLAGLV PGRAVVTTTG DGQSQLVLQR
GSSGHFSATV SINGVDIPMM IDTGASAVVL RAEDAASIGI NVDDLNYSVT VSTANGEALA
SPLRLRQVAI GPVIRENVRA LITQPGRMDG SLLGMSFLST LDSIQIHGDE LRLTD
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