| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1990 |
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| Symbol | |
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| ID | 7387266 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 1633917 |
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| End bp | 1636664 |
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| Gene Length | 2748 bp |
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| Protein Length | 915 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643651229 |
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| Product | tail component of prophage protein |
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| Protein accession | YP_002549425 |
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| Protein GI | 222148468 |
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| COG category | [S] Function unknown |
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| COG ID | [COG5281] Phage-related minor tail protein |
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| TIGRFAM ID | [TIGR01541] phage tail tape measure protein, lambda family
[TIGR02675] tape measure domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAACCG ACCTAGAAAA ACTCGTCGTG CAGCTTTCGG CCGACATCAA AGGCTATCAG
CGCGAGATGC AGAAGGCGGC TGGCGTCACC AACGCCCAAG CCCGCGCCAT TGAGAACCGC
CTGAAGAAAA TGGACGGCCA GTTCTCGGCG CTTGGCACGT CCATGGCGCG CGGGCTGATC
ACGCCGATTG CGGGGATCTC GGCGGCGCTG ACAGTGGATT CCGTCATCCA TTATGCCGAC
GCCTGGACCA GCGCCAAGAA CAGCCTGGCC GTCGCTGGCG TCGTCGGAAC AAATCAAGTT
TCCGTCCTCG ACCAGATTTA CAACTCTGCC CAGCGCAATG CCGCCCCGAT TGGTGCCATG
GCCGATTTGT TCGGCAAGGC GGCGCAATCC GGTGATTCGC TTGGTGCGTC TCAGGCCGAT
CTGCTGAAAT TCACCGATGG CGTCGGCACG GCACTGAAGA TCGAGGGCAA GTCTGCCACC
GAAGCGCAAG GCGCGCTGAC GCAGCTCGGC CAGCTCCTCG GCTCGACCCG CGTCCAGGCC
GAAGAATTCA ATTCGGTCAA TGAAGGGGCG CGACCGATCC TGATCGCCGT TGCCAATGGT
CTCAGCGCTG CGGGCGGTTC TGTCAGTAAG CTCAAACAAT TGGTCAATGA TGGCAAAGTG
TCCAACCAGG AATTCTTTCA GTCGTTCCTG AAGGGCTTGC CGACCATCCA GGGGATGGCG
GCCAATGCCA CCCAGACGAT TGAACAGGGC GTGACCAAGG TGAACAATGC TTTCACCCGT
TATATCGGCC AGACGGATGA AAGCCTCGGC GCATCCCAGC GCCTGGTGGC TGGATTGAAT
GCTCTGGCGG ATAATTTTGA ACAGACGGCC GATGTCGTCC TGAAGCTCGC CTCTGTCATT
GCTGCCGCTC TGGTTGGCCG GTCCATCGCT CTGATGATTG CCAATCTCGG CCTCGCCACA
GCGGCAGTTG TCCGGCTGGT CGCGGCGCTG CGGGCTGCAT CGTCCATGGC TGGCATTGCG
ACCGCCATCA GCGGCATCGG TGCTGCTGCC GGTCCGCTCG GCCTCATCAT CGGCGGAACG
GTCGTCGGTG CGCTTGCACT GTTTGCGAGT GGATCGGGTG AGGCAGGCCA AGCTGCTGAC
CGGTTTTCCG AGCGTTTGAA GCGTGTCGGA GAGGCGGCCG AAGAATCGGC CGAAAAGGTT
GATAAGGCGC GCCAAAGCTA CAATGCCGTT AAGGAAAACC AGTTGGCGCA GGAAGCCAAA
GTAGCGGCCT CGTCTCTTAA AAGCACCAGT GACGAGACGA TCAACCTCCT ATCGTATTTT
GCTAAAATGC GTGAATCCAA CCTGATCACG CCTGAGCAAG CGACCGAACT TGAGCGGTTG
CGTGACGGCA TTAAGACCGG CTCTGTTTCG GCTGACGATG CGCGGCAATC TCTGGCTAAG
ATGGCGACTG CGGACTACAA TTTTCAGCAG ATCGCAGACG CGATAGACCC AATCCTCAAG
AAACTGACGA CGATCAGCGT CGCTGCACAA CAAACAGCAA GCGATCTCGC CGCCGTCCAA
TCTGCAAAGG TCATGTCTCC AGAACAGGTT GCCGGATACA AGCAATATGC GCAATCGCGC
AAACAGGGCG AGGAGATGCT GCGGATCGGC AAGGCCTACG CTGATGAGGC GCAACGCCAG
AACACGCTGT CGAAAGAGCA GCTGGCTATT GAAGGCAAGA GGGCTAAAAT CAAGGCGGAT
CTCGCTAAAA CGGGCGGGGT TTTGCCTGAT GATAAAATCA CATCCTTGGC AATTGCGGAG
GTCAAAGCGG ATGAGCGGCG CTCCGATACC GGCAAAACGA CCGCCGCGCC GAGAGCGACG
GCAGATGACC GGCTCGACAT GGATATCCAG TCGATCCGGG ATCGGACGGC GGCCCTCGTC
GAAGAGCAGG CAGTCGTCGG GCAATCCTAC CGTCAACAGG AAAAGCGCCG CATGGCGCTC
GATCTCGAAC AGCAGGCGCT CCAGGATGTC CGTGAAGAGG CGCGGCGCAA GGGCGATGCT
GACTGGCAGA ATGCCAAGCT GGCACCTGAA CAGATCGCCA AGATCAATGC CGCCTCGGAC
GCTTATGCCG AGCAGGCCGA TATCCTGCGC AAGGTCGAGG ACGCCCAGCA GCGGTCGCAA
CAGGCAGCAC AAGAGTTCTA CGATACCGCC AAGTCAGCCT TTTCCGATGT GATCATGGGG
GCCGAAAGCT TTAGCGATGC CCTGTCCGGC GTTCTCAAGA AGCTGGGCGA ACTGGCGTTG
AATAGCGCGT TTGACGGCCT GTTCGGCGGA TCGTCCGCGA CCAGCAGTGG TGGCTGGTTG
ACCGGCTTTG CCAAGGCGAT TGGCTTTGCT GATGGCGGCT ATACCGGGGC AGGGGGCAAA
TATGAGCCTG CGGGCGTCGT GCATAAGGGC GAATATGTCT TTGACGCGGA TGCCGTTCGA
AAGGCTGGTG GACCGGCTGG CCTGGACGCC ATGCGCAAGC GGCTGAAGGG CTATTCCAGC
GGCGGCTATG TTGGGCCAAG TGCGCCACGC ATGCCGGATC TGTCCAGGGC TGCTGCCAGC
AAAGCCAGCT CGGTGCAGAT CAGTATTAAT CCGGTGATCG ACAATCGCGG GGCTTCTGTT
GAAGCGGTGG CGCGTCAAGA GCAGGCGATG AATAAGCTGC AAAAGACCTT GCCAGCCCAA
ATCATCACGG CGGTGCGCGA TGCCAGGGCG AGGGGTGTGA AGGTATGA
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| Protein sequence | MATDLEKLVV QLSADIKGYQ REMQKAAGVT NAQARAIENR LKKMDGQFSA LGTSMARGLI
TPIAGISAAL TVDSVIHYAD AWTSAKNSLA VAGVVGTNQV SVLDQIYNSA QRNAAPIGAM
ADLFGKAAQS GDSLGASQAD LLKFTDGVGT ALKIEGKSAT EAQGALTQLG QLLGSTRVQA
EEFNSVNEGA RPILIAVANG LSAAGGSVSK LKQLVNDGKV SNQEFFQSFL KGLPTIQGMA
ANATQTIEQG VTKVNNAFTR YIGQTDESLG ASQRLVAGLN ALADNFEQTA DVVLKLASVI
AAALVGRSIA LMIANLGLAT AAVVRLVAAL RAASSMAGIA TAISGIGAAA GPLGLIIGGT
VVGALALFAS GSGEAGQAAD RFSERLKRVG EAAEESAEKV DKARQSYNAV KENQLAQEAK
VAASSLKSTS DETINLLSYF AKMRESNLIT PEQATELERL RDGIKTGSVS ADDARQSLAK
MATADYNFQQ IADAIDPILK KLTTISVAAQ QTASDLAAVQ SAKVMSPEQV AGYKQYAQSR
KQGEEMLRIG KAYADEAQRQ NTLSKEQLAI EGKRAKIKAD LAKTGGVLPD DKITSLAIAE
VKADERRSDT GKTTAAPRAT ADDRLDMDIQ SIRDRTAALV EEQAVVGQSY RQQEKRRMAL
DLEQQALQDV REEARRKGDA DWQNAKLAPE QIAKINAASD AYAEQADILR KVEDAQQRSQ
QAAQEFYDTA KSAFSDVIMG AESFSDALSG VLKKLGELAL NSAFDGLFGG SSATSSGGWL
TGFAKAIGFA DGGYTGAGGK YEPAGVVHKG EYVFDADAVR KAGGPAGLDA MRKRLKGYSS
GGYVGPSAPR MPDLSRAAAS KASSVQISIN PVIDNRGASV EAVARQEQAM NKLQKTLPAQ
IITAVRDARA RGVKV
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