Gene Avi_1988 details

Gene Information

• Locus tag: Avi_1988
• Symbol: rfbC
• ID: 7387264
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: -
• Start bp: 1632921
• End bp: 1633484
• Gene Length: 564 bp
• Protein Length: 187 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 643651227
• Product: dTDP-4-dehydrorhamnose 3,5-epimerase
• Protein accession: YP_002549423
• Protein GI: 222148466
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes
• TIGRFAM ID: [TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAGTTTG AAGAAACGAA GCTGTCGGGC GTTTTTCTAA TCACTCCAAA GCGGTTTGGG 
GATGCGCGGG GCTATTTCAT GGAAACCTTC CGCGCCAGCC TGTTTGAAAG CGAAGTGGGA 
CCTTTCACCT TCGTTCAGGA CAACAAGTCG TTTTCGGCCG AGGTTGGTAC GGTTCGCGGC 
CTGCATTTCC AGTTGAACCC GAGGGCGCAG GGCAAGCTCG TTTCTTGTGC GGCTGGCGCT 
TTGCTGGACG TCGCTGTCGA TATTCGCCAG GGCTCGCCGA CCTATGGCCA GATGGTGAAA 
GCCGAACTGA CTGCCGAAAA CGGCTGCCAG CTTTGGGTGC CGCCGGGTTT TGCGCATGGC 
TTCTGCACAT TGCAGCCCAA TACCGTGATC AGCTACAAGG TGACGGATTA TTACAGCCCG 
GATCATGACC GGGGCCTGTT GTGGAACGAT CCGGCGCTGG CAATCGATTG GCCGGTGACG 
GAAGACAACG CCATCCTGTC TGACAAGGAC AAGAAGCAGC CGAAACTGAG CGAGCTTGAG 
ACGAATTTCG TCTATCAGCC TTAA 

 

Protein sequence

MQFEETKLSG VFLITPKRFG DARGYFMETF RASLFESEVG PFTFVQDNKS FSAEVGTVRG 
LHFQLNPRAQ GKLVSCAAGA LLDVAVDIRQ GSPTYGQMVK AELTAENGCQ LWVPPGFAHG 
FCTLQPNTVI SYKVTDYYSP DHDRGLLWND PALAIDWPVT EDNAILSDKD KKQPKLSELE 
TNFVYQP