Gene Avi_1945 details

Gene Information

• Locus tag: Avi_1945
• Symbol: dnaJ
• ID: 7387240
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 1607799
• End bp: 1608410
• Gene Length: 612 bp
• Protein Length: 203 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 643651202
• Product: molecular chaperone DnaJ family
• Protein accession: YP_002549399
• Protein GI: 222148442
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0484] DnaJ-class molecular chaperone with C-terminal Zn finger domain

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.388282
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGATCGATC CTTATGTCAT GCTGGGTTTG GAGCGCGATG CCGATGAGGC GGCGGTCAAG 
GCGGCGTATC GCAAGAAGGC CAAGAGCGCC CATCCAGATG CCGGCGGCGA CCCGGATGAA 
TTTGGCAGGA TCACTACGTC CTATGATCTC TTGAAGGATC CGGTTCGCCG TAAGGTCTAT 
GATGATACCG GCTATGATCC GCAATTGGCC GATGTTGCCG ACCTGAAGGG CTTGATGGTG 
CTGGAATCGC TGATTAACGA CATGATTCTT GACGAGCGCG AGCCCGGCAG TTTCGATCCG 
GTCGCGGGCC TGCGCCGCAA GTTGACGGAC GATATCCTCA AAGCCCGGTT TCATATTCTG 
GAACTGGAGC GTCACCGCAC CCGTATCCGC AAGCATGTGG ATCGTATTGG CCGGCGACCT 
GAAACCGATG TGCTCGGCTC GATGTTGCGC GCCCGCACCC AGTCGATTGC CGAAGCGATC 
AAGAATGCCG AAACCCAGAT CGACGCCATC GAGCGCGCCT ATTCGATGCT AGAGGGCTAT 
TCCTACGAGC TGGAACCACT GGTGGAGACG CTGTCCGATC CTGTTCCGGA TCTGCCGAAG 
GCGGCCGAAT AG 

 

Protein sequence

MIDPYVMLGL ERDADEAAVK AAYRKKAKSA HPDAGGDPDE FGRITTSYDL LKDPVRRKVY 
DDTGYDPQLA DVADLKGLMV LESLINDMIL DEREPGSFDP VAGLRRKLTD DILKARFHIL 
ELERHRTRIR KHVDRIGRRP ETDVLGSMLR ARTQSIAEAI KNAETQIDAI ERAYSMLEGY 
SYELEPLVET LSDPVPDLPK AAE