| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1913 |
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| Symbol | icdA |
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| ID | 7387219 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 1583284 |
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| End bp | 1584498 |
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| Gene Length | 1215 bp |
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| Protein Length | 404 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643651181 |
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| Product | isocitrate dehydrogenase |
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| Protein accession | YP_002549378 |
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| Protein GI | 222148421 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0538] Isocitrate dehydrogenases |
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| TIGRFAM ID | [TIGR00127] isocitrate dehydrogenase, NADP-dependent, eukaryotic type |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAAAGA TCAAGGTTGC CAACCCGGTC GTCGATCTCG ACGGCGATGA AATGACCCGT
ATCATCTGGC AGTTCATCAA GGAAAAGCTG ATCCTTCCCT ATCTCGATCT CGAGATTGAA
TACTACGACC TCTCGGTAGA AAACCGCGAT GCAACCAATG ACCAGGTGAC GATCGATTCC
GCCCACGCCA TCAAAAAGCA CGGCGTCGGC ATCAAATGCG CCACCATCAC GCCAGACGAA
GCCCGCGTGA AGGAATTCAA CCTGAAGGAA ATGTGGAAAA GCCCGAACGG CACGATCCGC
AACATCCTCG GCGGCGTTAT TTTCCGCGAG CCGATCATCT GCAAAAACGT TCCCCGCCTC
GTCCCCGGCT GGACCCAGCC AATCGTCGTC GGCCGCCATG CCTTCGGCGA CCAGTATAAG
GCAACCGACT TCAAATTCCC CGGCAAGGGC AAGCTGACCA TCAAGTTCGT CGGCGAAGAC
GGCCAGGTGA TCGAGAAGGA CGTGTTCGAC GCACCGTCCG CAGGTGTGGC CATGGCCATG
TACAACCTGG ATGATTCGAT TCGCGACTTC GCCCGTGCTT CGATGAACTA CGGTTTGATG
CGCAAATGGC CGGTCTATCT GTCGACCAAG AACACCATTT TGAAGGCCTA TGACGGTCGC
TTCAAGGATA TTTTCGAGGA AGTCTACCAG GCCGAATTCA AGGCTCAGTT CGACGCCGCC
GGCATTACCT ATGAGCATCG CCTGATCGAC GACATGGTTG CCTCTGCACT GAAATGGTCC
GGCGGCTATA TCTGGGCCTG CAAGAACTAT GACGGCGACG TCCAGTCGGA CACGGTTGCG
CAGGGCTTCG GCTCGCTCGG CCTGATGACC TCGGTTCTGC TGTCGCCGGA TGGCCGCACG
GTCGAAGCCG AAGCCGCGCA CGGCACCGTG ACCCGTCACT ACCGCCAGCA CCAGAAGGGC
CAGGAAACCT CGACCAATTC CATCGCCTCG ATCTTTGCCT GGACCCGTGG CCTCGCGCAC
CGCGCCAAGC TGGACGACAA TGCCGAGCTG GCCAAGTTCG CCCTCACCCT TGAAAAGGTC
TGCGTTGACA CTGTCGAAGC TGGCTACATG ACCAAGGATC TGGCGCTGCT GATCGGTCCC
GACCAGCCGT GGCTGTCGAC CACTGCTTTC CTCGACAAGG TCGATGAAAA CCTCCGGGCT
GCAATGGCTG CCTGA
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| Protein sequence | MQKIKVANPV VDLDGDEMTR IIWQFIKEKL ILPYLDLEIE YYDLSVENRD ATNDQVTIDS
AHAIKKHGVG IKCATITPDE ARVKEFNLKE MWKSPNGTIR NILGGVIFRE PIICKNVPRL
VPGWTQPIVV GRHAFGDQYK ATDFKFPGKG KLTIKFVGED GQVIEKDVFD APSAGVAMAM
YNLDDSIRDF ARASMNYGLM RKWPVYLSTK NTILKAYDGR FKDIFEEVYQ AEFKAQFDAA
GITYEHRLID DMVASALKWS GGYIWACKNY DGDVQSDTVA QGFGSLGLMT SVLLSPDGRT
VEAEAAHGTV TRHYRQHQKG QETSTNSIAS IFAWTRGLAH RAKLDDNAEL AKFALTLEKV
CVDTVEAGYM TKDLALLIGP DQPWLSTTAF LDKVDENLRA AMAA
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