Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_1897 |
Symbol | |
ID | 7387209 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 1573046 |
End bp | 1574470 |
Gene Length | 1425 bp |
Protein Length | 474 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 643651171 |
Product | transcriptional regulator GntR family |
Protein accession | YP_002549368 |
Protein GI | 222148411 |
COG category | [E] Amino acid transport and metabolism [K] Transcription |
COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTAACAC ATTGGCTCCC CGACCTTTCG ACAGCAGAGG GTCCGCTTTA TATCAGGATT GCGGATCGGG CAGAGGCGGA TATCAAGACC GGCAGGTTGT CGTCCGGCGC AAAGCTGCCG CCGCAGCGGG ATCTTGCCTT TGATTTGAAG GTAACAATCG GGACAATTAC CCGTGCCTAT GCGCTATTGC GGGAACGTGG GCTGGTGACC GGTGAAGTCG GGCGCGGCAC TTACGTCCAG TCAAGCCTGG CCGAGAGCGA AACCGATATT CATCGCGACC CGGTTACCCT CACCTATGGC GGCACGCGAA CGCTGTCGCC GCCGCCGGGC AAGCTGCGTT TTGACACCAC CGCTGCCATC GATGTCGGCC AGGCGGACAT TATCGGCCGT TTGATGACAG ATATTGCCCG CGATCAACCG GACGAGATCG CCAGCTACAC CCGGACCCTG CTACCGGACT GGCTGGAAGC GGGCCGCCGC TGGCTATCGA ATGGCGACTG GAGCCCAGAG GCTGCCAATA TCGTTCCACA GATGGGTGTA CATGCCGGAG TGAATGCGGT GATCGCCGCG ATCAGCGGCA CCGGTGACCG GATCGTTTGC GAACACCTGA CCTATTCACA GATTGCCCGT AGCGCCTCGC TGATGGGTCG CCAGATTGCG TTGGTGGATT CAGACCATGA CGGCATCATG CCGGAGGACT TTGAACGGGT CTGCGCACGC GAGCACCCAA AGGCAGCCTT CATCATGTCA TCGGGCCAAA ATCCGACGCT ATCCTGCCTG CCCCTGTCAC GGCGGCTGGA GATCATCGAC ATCGCCCGCC GTTATAATGT CTGGCTGATC GAGGATTACA TTTATGGAGC GCTGGTCGAC GATGGCATTC CCTTGCTGGC CCAACTGGCG CCAGACAGGA CATTTCTGCT CAACAGCCTG TCTAAATCCG TGGCGGCCGG GGTGCGCGGC GGCTGGGTCG CCTGCCCTGA CCATATGAGC CAGCGCGTCC GCGTCACCCA GAAAATGGTC TGCGGCGGCC TGCCCTTCTT GCTGGCGGAA CTATCGGCGC GCCTGGTTCT GTCGGGGGCT GCCGACGATA TTCGCGGGCG GGTGCTGGAA GAGCTTTCGG CTCGGGAACA GATTGTCCGG CAGTTGTTCG AAGGTTACGA ATTCCGCTCG CATCCACGCC TGCCGTATTT CTGGCTGAAA CTGCCGGAGC CATGGCTCTC TGGCACATTC AAGCAGGCCG CACTGGACCA GGGCGTGTTG ATCGACGATG AGGATGAGTT CAAACCGGCC CGTTCATCGC GGGTCTTCCA CCATATCCGC GCTGGCTTCA GCGAAGGGCG GGATCGAAGC ATCGCCGAAG GTGGCCTGAT CACGCTCAGA CGGATTCTCG ACCAGATCCC GGTCGGCAGC AACGCCGTCA TGTAA
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Protein sequence | MVTHWLPDLS TAEGPLYIRI ADRAEADIKT GRLSSGAKLP PQRDLAFDLK VTIGTITRAY ALLRERGLVT GEVGRGTYVQ SSLAESETDI HRDPVTLTYG GTRTLSPPPG KLRFDTTAAI DVGQADIIGR LMTDIARDQP DEIASYTRTL LPDWLEAGRR WLSNGDWSPE AANIVPQMGV HAGVNAVIAA ISGTGDRIVC EHLTYSQIAR SASLMGRQIA LVDSDHDGIM PEDFERVCAR EHPKAAFIMS SGQNPTLSCL PLSRRLEIID IARRYNVWLI EDYIYGALVD DGIPLLAQLA PDRTFLLNSL SKSVAAGVRG GWVACPDHMS QRVRVTQKMV CGGLPFLLAE LSARLVLSGA ADDIRGRVLE ELSAREQIVR QLFEGYEFRS HPRLPYFWLK LPEPWLSGTF KQAALDQGVL IDDEDEFKPA RSSRVFHHIR AGFSEGRDRS IAEGGLITLR RILDQIPVGS NAVM
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