Gene Avi_1896 details

Gene Information

• Locus tag: Avi_1896
• ID: 7387208
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 1572413
• End bp: 1573027
• Gene Length: 615 bp
• Protein Length: 204 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 643651170
• Product: hypothetical protein
• Protein accession: YP_002549367
• Protein GI: 222148410
• COG category: [R] General function prediction only
• COG ID: [COG3218] ABC-type uncharacterized transport system, auxiliary component

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGGTATT CTTTAGCGGT TCTGCGTCCA ATGGCGGTGT TGCGCGCCGC TTGTGCCCTG 
TCCATTCTCG GCGTGATGCT GGCGGGCTGC GGCACGTCGC CGAATGACAC ATATGATCTG 
GCCAGTATCC GTGCCGCCAC CACGACCCAA TCTGCTCAGA AACGGCAGGT TCTGGTTGCC 
GATCCGACCG CGCTGAAAGT GCTCGACAGC GACATGATCG TGGTGCGGGT GTCCGGTACG 
GAAATGCAAT ATCTGGCCAA GTCGCAATGG AGCGACAAGC TGCCACGTAT GGTGCAGTCA 
AAACTGGTCG AGGCTTTCGA AAATACCGGT AAGCTCGGCG GCGTAGGCAA GCCGGGGCAG 
GGCCTGGCAA TCGATTATCA ATTGCTTTCC GATATCAGGA CCTTCGAGGT CGAGGCTGGC 
GGTATTCGCC GGGCCAATGT CGAGATTTCC GTCAAGCTGC TCAATGACCG CAATGGCAGT 
GTGATTTCCC AGAAGGTGTT TTCCGCCAGC GTTCCCGCCC GTGGCGGCGA TAATCAGGCG 
CTTGTCAACG CTCTGTCGCA GGCTTTCGCC AAGGTTAGCG GCGATATCGT CAACTGGACG 
CTGACGACGA TCTGA 

 

Protein sequence

MGYSLAVLRP MAVLRAACAL SILGVMLAGC GTSPNDTYDL ASIRAATTTQ SAQKRQVLVA 
DPTALKVLDS DMIVVRVSGT EMQYLAKSQW SDKLPRMVQS KLVEAFENTG KLGGVGKPGQ 
GLAIDYQLLS DIRTFEVEAG GIRRANVEIS VKLLNDRNGS VISQKVFSAS VPARGGDNQA 
LVNALSQAFA KVSGDIVNWT LTTI