Gene Avi_1867 details

Gene Information

• Locus tag: Avi_1867
• Symbol: rpoA
• ID: 7386826
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 1545728
• End bp: 1546738
• Gene Length: 1011 bp
• Protein Length: 336 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 643651150
• Product: DNA-directed RNA polymerase subunit alpha
• Protein accession: YP_002549347
• Protein GI: 222148390
• COG category: [K] Transcription
• COG ID: [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit
• TIGRFAM ID: [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATTCAGA AGAATTGGCA GGAACTGATC AAGCCGAACA AGGTTGAGTT CTCCTCCAGC 
GGTCGCACCA AGGCAACCCT GGTTGCCGAA CCGCTTGAGC GGGGCTTCGG TCTGACGCTC 
GGCAACGCGC TTCGTCGCGT TTTGCTGTCG TCGCTGCGCG GTGCTGCCGT GACGGCTGTC 
CAGATCGACG GTGTTCTGCA TGAATTCTCG TCGATCCCGG GTGTTCGCGA AGATGTCACC 
GACATCGTTT TGAACATCAA GGAAATTGCC ATCAAGATGG ACGGCGACGA TGCCAAGCGC 
ATGGTTGTCC GCAAGCAGGG TCCAGGCGTC GTGACCGCTG GAGATATCCA GACGGTTGGC 
GATATCGAGA TCCTCAATCC GCACCACGTC ATCTGCACGC TGGATGAAGG CGCGGAAATC 
CGGATGGAAT TCACGGTCAA CAACGGCAAG GGCTATGTCC CGGCTGATCG TAACCGGGCA 
GAAGATGCTC CGATTGGGCT TATCCCGGTC GATAGCCTTT ATTCGCCGGT CAAGAAAGTG 
TCCTACAAGG TGGAAAACAC CCGCGAAGGC CAAGTTCTTG ACTACGACAA GCTGACCATG 
ACGATCGAGA CCGACGGGTC TGTTTCGGGT GAAGATGCGG TGGCTTTCGC TGCTCGTATT 
CTCCAGGACC AGCTGTCTGT CTTCGTCAAC TTCGATGAGC CGCAGCGTGA AGCTGAAGAA 
GAAGCCGTTA CCGAACTGGC TTTCAACCCG GCGCTGTTGA AGAAGGTCGA CGAACTCGAA 
CTTTCGGTCC GTTCGGCCAA CTGCCTGAAG AACGACAATA TCGTGTATAT TGGCGATCTG 
ATCCAGAAGA CCGAAGCCGA AATGTTGCGC ACGCCGAACT TTGGTCGCAA GTCGCTGAAC 
GAGATCAAGG AAGTTCTGGC TTCCATGGGC CTGCATCTGG GTATGGAAGT TCCTGCCTGG 
CCGCCGGAAA ACATTGAAGA TCTCGCCAAG CGTTACGAAG ACCAATATTA A 

 

Protein sequence

MIQKNWQELI KPNKVEFSSS GRTKATLVAE PLERGFGLTL GNALRRVLLS SLRGAAVTAV 
QIDGVLHEFS SIPGVREDVT DIVLNIKEIA IKMDGDDAKR MVVRKQGPGV VTAGDIQTVG 
DIEILNPHHV ICTLDEGAEI RMEFTVNNGK GYVPADRNRA EDAPIGLIPV DSLYSPVKKV 
SYKVENTREG QVLDYDKLTM TIETDGSVSG EDAVAFAARI LQDQLSVFVN FDEPQREAEE 
EAVTELAFNP ALLKKVDELE LSVRSANCLK NDNIVYIGDL IQKTEAEMLR TPNFGRKSLN 
EIKEVLASMG LHLGMEVPAW PPENIEDLAK RYEDQY