| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1866 |
|---|
| Symbol | rpsK |
|---|
| ID | 7386825 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 1545239 |
|---|
| End bp | 1545628 |
|---|
| Gene Length | 390 bp |
|---|
| Protein Length | 129 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643651149 |
|---|
| Product | 30S ribosomal protein S11 |
|---|
| Protein accession | YP_002549346 |
|---|
| Protein GI | 222148389 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0100] Ribosomal protein S11 |
|---|
| TIGRFAM ID | [TIGR03632] 30S ribosomal protein S11 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAAGG AAGCCACACG CGTTCGCCGT AGAGAGCGCA AAAATATTTC GTCGGGTGTT
GCGCACGTCA ACTCGACATT CAACAATACG ATGATCACCA TCACCGACGC GCAGGGCAAT
GCAATTGCCT GGTCGTCTGC TGGTGCAAAG GGCTTCAAGG GTTCGCGTAA GTCGACCCCG
TTTGCCGCTC AGATCGCTGC TGAAGATTGC GCCAAGAAGG CTCAGGAACA CGGCATGAAG
TCGCTGGAAG TCGAAGTTTG CGGTCCGGGT TCTGGCCGTG AGTCGGCTCT GCGCGCTTTG
CAGGCTGCGG GCTTCATGAT CACCTCGATC CGCGATGTGA CCCCGATCCC GCACAATGGC
TGCCGTCCTC GCAAGAAGCG CCGCGTCTGA
|
|---|
| Protein sequence | MAKEATRVRR RERKNISSGV AHVNSTFNNT MITITDAQGN AIAWSSAGAK GFKGSRKSTP
FAAQIAAEDC AKKAQEHGMK SLEVEVCGPG SGRESALRAL QAAGFMITSI RDVTPIPHNG
CRPRKKRRV
|
|---|
| |