| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1863 |
|---|
| Symbol | secY |
|---|
| ID | 7386822 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 1542521 |
|---|
| End bp | 1543861 |
|---|
| Gene Length | 1341 bp |
|---|
| Protein Length | 446 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 643651146 |
|---|
| Product | preprotein translocase subunit SecY |
|---|
| Protein accession | YP_002549343 |
|---|
| Protein GI | 222148386 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0201] Preprotein translocase subunit SecY |
|---|
| TIGRFAM ID | [TIGR00967] preprotein translocase, SecY subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.271597 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTCTG CAGCGGAACA ATTGGCCTCG AACCTGAACT TTTCAACCTT TGCGAAGGCA
GAGGATTTGA AAAAGCGCAT CTGGTTCACG CTGGCCGCCC TTCTTGTCTA TCGTCTAGGT
ACCCACATTC CGCTGCCTGG CCTCAACCCA GAGGCCTACG CGGCTGCCTT TAAAGGCCAG
TCCGGTGGTA TTCTGGGACT GTTCAACATG TTTTCCGGTG GCGCGGTGCA GCGCATGGCG
ATTTTCGCCC TGGGGATCAT GCCCTATATT TCCGCCTCGA TTATCGTCCA GCTGATGACA
TCAGTTGTTC CTTCTCTTGA AAACCTCAAG AAGGAAGGTG AGCAGGGGCG CAAGATCATC
AATCAATATA CCCGCTACGG CACTGTTCTG CTCGGCACGC TGCAAGCCTA TGGAATTGCG
GTTGGCCTGG AGCATGGGAA TGGCTTGGTG ACCGATCCTG GCTTGTTCTT CCGGCTGTCT
ACCGTCGTAA CGCTGCTGGG CGGTACGATG TTCCTGATGT GGCTCGGCGA GCAGATCACG
TCGCGTGGTA TTGGTAACGG TATTTCGCTG ATTATCTTCG CGGGTATTGC CGCTGGTCTG
CCGACTGCTC TTGCTGGTAC ATTGGAGCTT GGCCGCACCG GCGCTTTGTC CACAGCTTTG
ATCCTGACGG TGATTCTGGT GGCGATTGGC GTGATTGCGC TGATCGTGTT CTTCGAGCGC
GCCCAGCGCC GCTTGTTGAT CCAGTATCCG AAGCGTCAGG TCGGCAATCG GATGTTCCAG
GGTGACACCT CGCATCTGCC ACTGAAGCTG AACACCTCGG GCGTGATTCC CGCGATCTTC
GCATCTTCGC TGTTGCTGCT GCCGGCGACT GCTGCTGGCT TCACCGGTGG CTCAACGCTG
CCGGCCTGGG CGACCACCAT CATCAGCGCG CTTGGCCATG GCCAGCCTGC CTATATGGTG
CTCTATGCGC TGCTGATCGG CTTCTTTGCA TTCTTCTATA CGGCCATTGT TTTCAATCCG
AAGGACACGG CCGATAATCT GAAAAAGCAT GGCGGCTTCA TTCCGGGGAT TCGTCCCGGC
GAGCGCACGG CTGAATATAT CGATTATGTG CTGACGCGAA TTACCGTTGT TGGCGCCATT
TACCTTGTCT TCGTCTGTAT CCTTCCCGAA ATTTTGGTTT CTCAGACCGG GGTGCCCTTA
TCCCTTGGTG GTACGTCGCT TTTGATTGTT GTCAGCGTTA CCCTGGATAC GGTAGCACAG
GTACAGGGTC ACCTGATTGC TCAGCAATAT GAGGGGCTGA TCAAGAAATC GAAGTTGCGT
GGAGGAAAGA GGGGACGATG A
|
|---|
| Protein sequence | MASAAEQLAS NLNFSTFAKA EDLKKRIWFT LAALLVYRLG THIPLPGLNP EAYAAAFKGQ
SGGILGLFNM FSGGAVQRMA IFALGIMPYI SASIIVQLMT SVVPSLENLK KEGEQGRKII
NQYTRYGTVL LGTLQAYGIA VGLEHGNGLV TDPGLFFRLS TVVTLLGGTM FLMWLGEQIT
SRGIGNGISL IIFAGIAAGL PTALAGTLEL GRTGALSTAL ILTVILVAIG VIALIVFFER
AQRRLLIQYP KRQVGNRMFQ GDTSHLPLKL NTSGVIPAIF ASSLLLLPAT AAGFTGGSTL
PAWATTIISA LGHGQPAYMV LYALLIGFFA FFYTAIVFNP KDTADNLKKH GGFIPGIRPG
ERTAEYIDYV LTRITVVGAI YLVFVCILPE ILVSQTGVPL SLGGTSLLIV VSVTLDTVAQ
VQGHLIAQQY EGLIKKSKLR GGKRGR
|
|---|
| |