Gene Avi_1862 details

Gene Information

• Locus tag: Avi_1862
• Symbol: rplO
• ID: 7386821
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 1541700
• End bp: 1542179
• Gene Length: 480 bp
• Protein Length: 159 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 643651145
• Product: 50S ribosomal protein L15
• Protein accession: YP_002549342
• Protein GI: 222148385
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0200] Ribosomal protein L15
• TIGRFAM ID: [TIGR01071] ribosomal protein L15, bacterial/organelle

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.225318
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAACTGA ATGAAATCAA AGACAACGAA GGCTCCAGCA AGGACCGTAT CCGCGTAGGT 
CGCGGTATCG GTTCTGGCAA GGGCAAGACC GGTGGCCGTG GCGTCAAGGG TCAGAAGGCG 
CGTTCGGGCG TTGCCGTCAA TGGCTTCGAA GGCGGCCAGA TGCCGATCTA TCGCCGCCTG 
CCGAAGCGTG GCTTCAACAA CATCTTCGCT TCCGAATTCA CGACCGTTTC GCTAGGTCGG 
ATTCAGACAG CGATCGATGC AGGCAAGCTC GACGCTTCAG CCACCATCGA TGCAGCAGCT 
CTCAAGGCTG CTGGTGTGAT TCGCCGCCTC AAGGACGGCG TTCGCGTCCT CGGTGACGGT 
GAGTTGACGA CGAAGGTAAC GATTGAAGTT GCCGGCGCTT CCAAGCCAGC GGTCGAAAAG 
ATCGAAAAGG CGGGCGGCAC GATCAAGCAG CTGTCAGCTG CTGCGGAAAA GTCGGAATAA 

 

Protein sequence

MKLNEIKDNE GSSKDRIRVG RGIGSGKGKT GGRGVKGQKA RSGVAVNGFE GGQMPIYRRL 
PKRGFNNIFA SEFTTVSLGR IQTAIDAGKL DASATIDAAA LKAAGVIRRL KDGVRVLGDG 
ELTTKVTIEV AGASKPAVEK IEKAGGTIKQ LSAAAEKSE