| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1861 |
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| Symbol | rpmD |
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| ID | 7386820 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 1541480 |
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| End bp | 1541683 |
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| Gene Length | 204 bp |
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| Protein Length | 67 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643651144 |
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| Product | 50S ribosomal protein L30 |
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| Protein accession | YP_002549341 |
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| Protein GI | 222148384 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1841] Ribosomal protein L30/L7E |
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| TIGRFAM ID | [TIGR01308] ribosomal protein L30, bacterial/organelle |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.407408 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCCAAGA ACACTGAAGC CCAGAAGACG ATCACGGTCG AGCAGATCGG TTCGCCTATT
CGCCGCCCGG CTGTACAGCG CCAGACGCTT ATCGGCCTGG GTCTCAACAA GATGCATCGG
GTCCGCACGT TGGAAGATAC GCCTTCGGTT CGTGGCATGA TCCGTGCTGT CCAGCATCTC
GTTCGCGTCG TCGACGAGAA GTGA
|
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| Protein sequence | MAKNTEAQKT ITVEQIGSPI RRPAVQRQTL IGLGLNKMHR VRTLEDTPSV RGMIRAVQHL
VRVVDEK
|
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| |