Gene Avi_1859 details

Gene Information

• Locus tag: Avi_1859
• Symbol: rpsE
• ID: 7386819
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 1540899
• End bp: 1541468
• Gene Length: 570 bp
• Protein Length: 189 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 643651143
• Product: 30S ribosomal protein S5
• Protein accession: YP_002549340
• Protein GI: 222148383
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0098] Ribosomal protein S5
• TIGRFAM ID: [TIGR01021] ribosomal protein S5, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.451556
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCACAAG AAAAGCGTGG TTCGCGGGAC GACCGTCAGA ACCGTGAAGA GCGCGATAGC 
GAATTTGTCG ACAAGCTGGT CGCCATCAAT CGCGTCGCCA AGGTCGTCAA GGGCGGCCGT 
CGTTTTGGTT TCGCTGCTCT CGTCGTCGTC GGCGACCAGA AGGGTCGTGT TGGCTTCGGT 
CATGGCAAGG CACGTGAAGT GCCGGAAGCC ATTCGCAAGG CAACCGAGTC CGCCAAGCGC 
GACTTGATTT TCGTACCGCT GCGTGATGGC CGTACGCTGC ATCATGACGT TCATGGCCGT 
CACGGCGCCG GCAAAGTGCT GCTGCGGTCT GCTAAGGCTG GTACCGGTAT CATCGCCGGT 
GGTCCGATGC GCGCCGTTTT CGAAACGCTC GGCATGCATG ACGTTGTTGC GAAGTCGACC 
GGTTCGTCGA ACCCTTACAA CATGGTTCGT GCAACGTTCG ATGCGCTGAA GCACCAGGTT 
CATCCGAAGG ACGTCGCTGC ACAGCGTGGC CTGAAGTATG CGACCTTGCA GGCTCGTCGT 
GCCGCGTCCG GCAACGGTTC TGAAGAATAA 

 

Protein sequence

MAQEKRGSRD DRQNREERDS EFVDKLVAIN RVAKVVKGGR RFGFAALVVV GDQKGRVGFG 
HGKAREVPEA IRKATESAKR DLIFVPLRDG RTLHHDVHGR HGAGKVLLRS AKAGTGIIAG 
GPMRAVFETL GMHDVVAKST GSSNPYNMVR ATFDALKHQV HPKDVAAQRG LKYATLQARR 
AASGNGSEE