| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1857 |
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| Symbol | rplR |
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| ID | 7386818 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 1540391 |
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| End bp | 1540753 |
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| Gene Length | 363 bp |
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| Protein Length | 120 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643651142 |
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| Product | 50S ribosomal protein L18 |
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| Protein accession | YP_002549339 |
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| Protein GI | 222148382 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0256] Ribosomal protein L18 |
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| TIGRFAM ID | [TIGR00060] ribosomal protein L18, bacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.58959 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCAAGCA GAAAAGAAGC ACTTGTACGT CGTGCCAACC GCGTACGGCG TCAGATCAAG
GCGGTGGCCA ATGGCCGTCC GCGTCTGTCG GTACATCGCT CTTCGAAGAA CATCTACGTC
CAGGTTATCG ACGACGTGGC CGGCCGTACG TTGGCTGCCG CATCGACGCT GGACGGCAGC
CTGCGCTCTT CGCTGAAGAC CGGCGCCGAC ACGGCAGCAG CCGCTGCTGT TGGCAAGCTG
GTCGCCGAGC GTGCTGTTGC CGCTGGTGTG AAGGAAGTCG TGTTCGATCG CGGCGCCTTC
ATCTATCATG GCCGCATCAA GGCACTGGCA GAAGCCGCCC GCGAAGGTGG TCTGTCGTTC
TAA
|
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| Protein sequence | MASRKEALVR RANRVRRQIK AVANGRPRLS VHRSSKNIYV QVIDDVAGRT LAAASTLDGS
LRSSLKTGAD TAAAAAVGKL VAERAVAAGV KEVVFDRGAF IYHGRIKALA EAAREGGLSF
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