Gene Avi_1856 details

Gene Information

• Locus tag: Avi_1856
• Symbol: rplF
• ID: 7386817
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 1539845
• End bp: 1540378
• Gene Length: 534 bp
• Protein Length: 177 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 643651141
• Product: 50S ribosomal protein L6
• Protein accession: YP_002549338
• Protein GI: 222148381
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0097] Ribosomal protein L6P/L9E
• TIGRFAM ID: [TIGR03654] ribosomal protein L6, bacterial type

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.789542
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTCGTA TCGGTAAAAA GCCCGTTCAG GTTCCTGCAG GGATCACGGC CTCGGTTGAT 
GGCCAGAAAG TAACTGCCAA GGGCCCGAAG GGCGAACTCT TCTTCGTCGC AAATGACGAA 
ATCTCGGTTG CGCTTGAGGA CAATGCAATT GTCGTCAAGC CAGTCAACGA CTCCAAGGAT 
GCGCGTTCAA AGTGGGGCAT GTCCCGCACG ATGATCGAAA ACATCCTGAA GGGTGTCAAG 
GACGGCTACG AGCGCAAGCT CGAAATCAAT GGCGTTGGTT ACCGCGCATC TTTGCAGGGC 
AAGAACCTGC AGCTGGCGCT CGGTTTTAGC CACGACGTTG TGTATGAGCC GCCGCAGGGC 
ATCACTATCG CCGTTCCGAA GCCGACGGAA ATCGTGGTTT CCGGGATCAA CAAGCAGCAG 
GTCGGTCAGG TCGCTGCCGA GATCCGCGAA TATCGCGGCC CCGAGCCCTA TAAGGGCAAG 
GGCGTCAAGT ATGCCGAAGA GCGGATCGTC CGCAAAGAAG GCAAGAAGAA GTAA 

 

Protein sequence

MSRIGKKPVQ VPAGITASVD GQKVTAKGPK GELFFVANDE ISVALEDNAI VVKPVNDSKD 
ARSKWGMSRT MIENILKGVK DGYERKLEIN GVGYRASLQG KNLQLALGFS HDVVYEPPQG 
ITIAVPKPTE IVVSGINKQQ VGQVAAEIRE YRGPEPYKGK GVKYAEERIV RKEGKKK