| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1855 |
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| Symbol | rpsH |
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| ID | 7386816 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 1539404 |
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| End bp | 1539802 |
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| Gene Length | 399 bp |
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| Protein Length | 132 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643651140 |
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| Product | 30S ribosomal protein S8 |
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| Protein accession | YP_002549337 |
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| Protein GI | 222148380 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0096] Ribosomal protein S8 |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.236028 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACGATGA CTGATCCGTT GGGCGATATG CTCACCCGTA TCCGGAATGG TGCTGCCCGC
CGTAAGGCTT CGGTGGTTAC TCCGGCTTCC AAGCTGCGTG CGCGCGTTCT GGATGTTCTT
CAGGCTGAAG GCTACATTCG TGGCTATTCT GAAATCGACC ATGGTAACGG CAAGGCCGAG
ATCACGATCG AACTGAAATA TTATGAAGGC GCGTCGGTGA TCCGTGAGAT CGGCCGCGTG
TCCAAGCCGG GCCGCCGAGT CTATGTCTCG GTTAAGTCCA TTCCGCAGGT CGCGAACGGC
CTCGGCATTA CCATCCTTTC GACTCCGAAG GGCGTAATGG CCGATCACCA GGCTCGCGAA
CAGAATGTTG GTGGCGAGGT TCTCTGCTCT GTCTTCTAA
|
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| Protein sequence | MTMTDPLGDM LTRIRNGAAR RKASVVTPAS KLRARVLDVL QAEGYIRGYS EIDHGNGKAE
ITIELKYYEG ASVIREIGRV SKPGRRVYVS VKSIPQVANG LGITILSTPK GVMADHQARE
QNVGGEVLCS VF
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