| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1839 |
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| Symbol | rpsJ |
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| ID | 7386801 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 1532371 |
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| End bp | 1532679 |
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| Gene Length | 309 bp |
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| Protein Length | 102 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 643651125 |
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| Product | 30S ribosomal protein S10 |
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| Protein accession | YP_002549322 |
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| Protein GI | 222148365 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0051] Ribosomal protein S10 |
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| TIGRFAM ID | [TIGR01049] ribosomal protein S10, bacterial/organelle |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.051766 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAACGGCC AGAATATCCG TATCCGCCTG AAGGCGTTTG ATCACCGGGT TCTCGATGCC
TCTACGCGGG AGATCGTTTC TACCGCCAAG CGCACCGGTG CAAGCGTCCG CGGCCCGGTT
CCGCTTCCGA CCCGTATTGA AAAATTCACC GTCAACCGTT CGCCTCACGT CGACAAGAAG
AGCCGCGAAC AGTTTGAAAT GCGCACGCAT AAGCGTCTGC TGGACATCGT TGATCCGACT
CCGCAGACCG TCGATGCTTT GATGAAGCTC GACCTGGCTG CTGGCGTAGA CGTCGAAATC
AAGCTTTAA
|
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| Protein sequence | MNGQNIRIRL KAFDHRVLDA STREIVSTAK RTGASVRGPV PLPTRIEKFT VNRSPHVDKK
SREQFEMRTH KRLLDIVDPT PQTVDALMKL DLAAGVDVEI KL
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