Gene Avi_1833 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_1833 
SymbolrpsL 
ID7386797 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp1527507 
End bp1528115 
Gene Length609 bp 
Protein Length202 aa 
Translation table11 
GC content54% 
IMG OID643651121 
Product30S ribosomal protein S12 
Protein accessionYP_002549318 
Protein GI222148361 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0048] Ribosomal protein S12 
TIGRFAM ID[TIGR00981] ribosomal protein S12, bacterial/organelle 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0567288 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTTTCA GGACATATTG TTCTGAAGTT TGCCCCAGGC TTAGGATCCA AACGCACTTT 
GAAGACATGA ATGCTGCACG CATGACGCAG TCGCATGCGT CCTCTGCTTT TTGTGGTCCA
TCCGGAAGTC CGGATCGGGC CACATTCGCG CATGGCGAAA ATTGTGCGAG CGCCGCCGGA
AACGGCACAA ACGGGCCTGA AAAGGCTCAA GTGACAAGAA TTATAAGGGA TGGTTCTATG
CCTACCGTAA ATCAGCTGAT CCGCAAGCCG CGTCAGGCGC AGGTAAAGCG CAACAAGGTT
CCTGCCTTGC AGGAAAATCC ACAGAAGCGC GGCGTTTGCA CCCGCGTTTA TACCACGACC
CCGAAGAAGC CGAACTCGGC TCTGCGTAAG GTTGCCAAGA TCCGTTTGAC CAATGGCTTC
GAAGTCATCG GCTACATTCC GGGTGAAGGC CATAACCTGC AGGAACACTC TGTGGTCATG
ATCCGTGGCG GCCGCGTGAA GGACTTGCCT GGCGTTCGTT ACCACATCAT CCGTGGTGTT
CTCGATACCC AGGGTGTCAA GAACCGTAAG CAGCGCCGTT CCAAGTATGG TGCAAAGCGT
CCGAAGTAA
 
Protein sequence
MIFRTYCSEV CPRLRIQTHF EDMNAARMTQ SHASSAFCGP SGSPDRATFA HGENCASAAG 
NGTNGPEKAQ VTRIIRDGSM PTVNQLIRKP RQAQVKRNKV PALQENPQKR GVCTRVYTTT
PKKPNSALRK VAKIRLTNGF EVIGYIPGEG HNLQEHSVVM IRGGRVKDLP GVRYHIIRGV
LDTQGVKNRK QRRSKYGAKR PK