Gene Avi_1812 details

Gene Information

• Locus tag: Avi_1812
• Symbol: tuf
• ID: 7388006
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 1509896
• End bp: 1511071
• Gene Length: 1176 bp
• Protein Length: 391 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 643651106
• Product: elongation factor Tu
• Protein accession: YP_002549304
• Protein GI: 222148347
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0050] GTPases - translation elongation factors
• TIGRFAM ID: [TIGR00231] small GTP-binding protein domain; [TIGR00485] translation elongation factor TU

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAAAGA GTAAGTTTGA GCGCAACAAG CCGCACGTTA ACATCGGCAC GATCGGCCAC 
GTTGACCACG GCAAGACGTC GCTGACGGCA GCAATTACGA AGTATTTCGG TGAATACAAG 
GCGTATGACC AGATCGACGC CGCTCCGGAA GAAAAGGCCC GCGGCATCAC CATTTCGACG 
GCGCACGTCG AATATGAAAC GCCTGCCCGT CACTACGCTC ACGTTGACTG CCCCGGCCAC 
GCCGACTACG TCAAGAACAT GATCACCGGT GCAGCGCAGA TGGACGGCGC GATCCTGGTT 
TGCTCGGCAG CTGACGGCCC GATGCCGCAG ACCCGCGAGC ACATTCTTCT GGCGCGCCAG 
GTTGGCGTTC CCGCGATCGT CGTGTTCCTG AACAAGGTTG ACCAGGTTGA CGACGAAGAG 
CTTCTGGAGC TGGTCGAACT GGAAGTGCGC GAACTTCTGT CGTCCTACGA CTTCCCGGGC 
GACGATATTC CGATTGTCAA GGGTTCGGCT CTTGCTGCTC TGGAAGACAG CAACAAGAAG 
ATCGGCGAAG ACGCGATCCG CGAACTGATG GCGGCAGTTG ACTCCTACAT TCCGACGCCT 
GAGCGCCCGA TTGACCAGCC GTTCCTGATG CCAATCGAAG ACGTGTTCTC GATCTCTGGC 
CGTGGTACGG TTGTGACGGG TCGCGTTGAG CGTGGTATCG TCAAGGTTGG CGAAGAAGTC 
GAAATCGTCG GCATCCGCGC CACCTCGAAG ACGACCGTTA CCGGCGTTGA AATGTTCCGC 
AAGCTGCTCG ATCAGGGCCA GGCTGGCGAC AACATTGGTG CCCTGGTTCG CGGCGTACAG 
CGCGATGGCG TTGAGCGTGG CCAGATCCTG TGCAAGCCCG GTTCGGTTAA GCCGCACAAG 
AAGTTCATGG CAGAAGCCTA CATCCTGACG AAGGAAGAAG GCGGCCGTCA TACACCGTTC 
TTCACCAACT ACCGTCCGCA GTTCTACTTC CGCACGACGG ACGTTACCGG TATTGTTTCC 
CTGCCGGAAG GCACGGAAAT GGTTATGCCT GGTGACAACG TCACGGTTCA GGTTGAACTG 
ATCGTTCCGA TCGCCATGGA AGAAAAGCTG CGCTTCGCGA TCCGCGAAGG TGGCCGTACC 
GTCGGCGCCG GCATCGTCGC TTCGATCATC GAATAA 

 

Protein sequence

MAKSKFERNK PHVNIGTIGH VDHGKTSLTA AITKYFGEYK AYDQIDAAPE EKARGITIST 
AHVEYETPAR HYAHVDCPGH ADYVKNMITG AAQMDGAILV CSAADGPMPQ TREHILLARQ 
VGVPAIVVFL NKVDQVDDEE LLELVELEVR ELLSSYDFPG DDIPIVKGSA LAALEDSNKK 
IGEDAIRELM AAVDSYIPTP ERPIDQPFLM PIEDVFSISG RGTVVTGRVE RGIVKVGEEV 
EIVGIRATSK TTVTGVEMFR KLLDQGQAGD NIGALVRGVQ RDGVERGQIL CKPGSVKPHK 
KFMAEAYILT KEEGGRHTPF FTNYRPQFYF RTTDVTGIVS LPEGTEMVMP GDNVTVQVEL 
IVPIAMEEKL RFAIREGGRT VGAGIVASII E