Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_1794 |
Symbol | rne |
ID | 7386774 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 1495734 |
End bp | 1498841 |
Gene Length | 3108 bp |
Protein Length | 1035 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 643651094 |
Product | ribonuclease E |
Protein accession | YP_002549295 |
Protein GI | 222148338 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1530] Ribonucleases G and E |
TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.713418 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCAGACA AAATGCTAAT CGATGCGTCT CACGAAGAAG AGACGCGCGT CGTTGTCGTT CGCGGTAACA GGATCGAAGA ATTCGATTTT GAATCCCAGC ATAAGAAACA GATCCGCGGC AACATCTATC TGGCCAAAGT CACACGGGTC GAGCCTTCCT TGCAGGCCGC CTTCGTCGAT TACGGCGGCA ATCGTCACGG CTTCCTGGCT TTTGCAGAAA TCCATCCCGA TTATTATCAG ATCCCGCTTG CCGACCGTCA GGCCTTGCTG AAGGCTGAAG CCGAAGAGCA TGGCCGTCAC GACGACGGCG ATTTCGAGCC GGTGCGCAGC AGAGATCCCG GCGAACGCGA CCAGCCGGTG ATTGCCGATC CGGCCGAATT CGCCAATGAA GCCGAAGAAG TCGCTGGTCT CGCCGTCAAT CAGGCGGATG ACGATCACGC GCAAACCACA GCCGAGCAGC CCGCAGATGC GCCGCAAGCC GAGGCGTCAC AGACTGACGC AGTGCAGGCC GACGCAGTAC CGGCTGAGCC GCAAGCAGAC GAGGCAGCCC CCGAGGCTGC AGCAAAGCCC AAGGCACGCC GTCCGCGCAA GCCCCGCAAG AAGGCAGGCG AGGTTGAAGC CAGCGCCGAT GAAGCCGTCG CAGAACCTGT GGCCGTCGAA AGTGACGAGA CACCAGATGA CGGATCGAGC AATGGCAGCA TGGCCGCCAT GGTCGACACG GACTCGATCT CCGAAGAAAC CGATAGCCGC CATCGTCATG ACGATGATGA CGACGACGAT GATGATGACG GCGAGAAGGA AGAAATCGAA TCTGTTGGCG CCGAAGACGC CATGGAAGAG GTTCCCGACC GGGTGCGCCG CACGCCGCGC AAGCAATATC GCATCCAGGA AGTTATCAAG CGCCGCCAGA TTCTTCTGGT GCAGGTCGCC AAGGAAGAAC GTGGCAACAA GGGTGCTGCG CTGACCACCT ACCTGTCTCT GGCAGGCCGC TATTCTGTTC TGATGCCGAA TACGGCACGC GGCGGCGGCA TTTCGCGCAA AATCACCAAC CCCGCCGACC GCAAGCGGTT GAAGGAAGTG GCCCGCGATC TGGAAGTGCC GCTGGGCATG GGCGTTATCT TGCGCACCGC AGGTGCCAAT CGCACCAAGG TCGAGGTCAA GCGCGATTTC GAATATCTGA TGCGTCTCTG GGAAAACGTT CGCACCCTGA CGCTGAATTC CACCGCACCT TGCCTCGTCT ACGAGGAAGG CTCACTGATC AAGCGCTCGA TCCGCGACCT GTATAACAAG GATATCAGCG AGATCGTGGT GTCAGGCGAA GAAGGCTATC GTGAAGCGAA AGACTTCATG AAAATGCTGA TGCCGAGCCA CGCCAAGGTG GTTCAGCCCT ACCGCGACAT TCACCCGATC TTCTCGCGCT CCGGCATTGA GGCCCAGCTG GACCGGATGT TGCAGCCGCA GGTGACGCTG AAGTCTGGTG GTTATATCAT CATCAACCAG ACCGAAGCGC TGGTGTCCAT CGACGTGAAC TCGGGTCGTT CGACCCGCGA ATATTCCATC GAAGACACCG CCCTGCAAAC CAATCTGGAA GCCGCGGAAG AAGTGGCCCG CCAGTTGCGC CTGCGCGACC TTGCAGGTCT GATCGTCATC GACTTCATCG ACATGGAAGA GAAGCGCAAC AACCGCTCCG TCGAGAAGAA GCTGAAGGAT TGCCTGAAAA ACGATCGCGC CCGTATTCAG GTCGGACGTA TTTCGCATTT CGGTCTGCTG GAAATGTCGC GTCAGCGCAT TCGCGCCAGC GTGTTGGAAT CGACCACCCA GGTCTGCCAG CATTGCTCCG GCACAGGCCT GATCCGTTCG CAGTCCTCCG TTGCCCTGCA TGTACTGCGC GGCGTCGAAG AATATCTGCT GAAAAGCACC ACGCACGATA TTACCGTGCG TACCCTGCCG GAAACGGCGC TTTACCTGCT CAACCACAAG CGCGGCTCGA TTGTCGATTA TGAAAACCGC TTCGGCGTGT CGATCATCAT CGACTCGGAT GCCAGCGTCG GTCACCAGCA TTTCGCCATC GACAAGGGCG AGCCGGTTGC CAATCCGGTC CGCATCGAAA CCTTGCTGCC GCTGATCAGT GAGCCGGAAG AGGACGACCC GATCATTGAG ATCGAGGAAG AGGATGACGA GGACGTCGTT GAGGCTCCTG TTCAGGCACA GCCCGCATCA AGTGGCAATG CTGCAGCAAA CGCCGCCGAA GACGGCAACC GCAAGCGCAA GCGCCGCCGC CGCCGCCGTG GCAAGAATGG CAATGGCCAT GCCGATGGAC AGCAGAACGC TGCCGGCGGT GACGAAGGCG ACGATGACAG CGAAGGCGAA GACGACGCCG AAGATACGGC AGAAGATCGC GATGATAGCG TCGAGGCCTC TGACGCGTCT GAAGACGGCA ACAGCGAAAG CCAGCGCCGC AACAAGCGCC GCCGTCGTGG CAAGCGTGGT GGGCGTCGCG GTCGCGATGA AAATGGTGTG AGCGCCGATG CCGAAGGTAA TGACACTGCT GAAGATGACG ATTCTGCTGA AGAGTCAGTG CAAGCCGATG CCGATCAGGC TGTCGCCGTC GCTGAGGTTC CGTCCGATGC CGTCGCCGAC AGTGTTGTGG TGGCTGCCGA GGTCAGTGTC CCAGCAACAG AGGCCGTGAA AGCCGATGAG CCAGTGGCTG CCAAGCCACG CCGGGCTCGC AAGCCGAAAG CGTCAGCCAA AACCGAAGCC GCCGACAGCG TCGAAACGGT AACGGAACCT GCTGCTGTGC CTGAGGCTGT GGTTGTCGAA GCACCGGCTG CTGCCGAGCC TGTCGCCGCC TCCCCCGTCT CGGAAGAGAC GTCAGTACCG GCACCTGCTC AGGACGTCTC TGCACCAGAG CCTGCGGTCG AAGCGCCTGC TCCTGAAGTT GCGAGCGAGC CAGAGGCCGT AAGTGATGCC AGTGCCGAAA AGCCGGTGCG CGCCAATCGG TCGTCCAATG TCAGCACATC CGAACCGGTC GTTACCTCGG TGACCAACGG CGAGGAAGCT CCGAAGCCCA AGAAGGGCGG ATGGTGGCAG AAGCGCGGTT TCCTCTAG
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Protein sequence | MADKMLIDAS HEEETRVVVV RGNRIEEFDF ESQHKKQIRG NIYLAKVTRV EPSLQAAFVD YGGNRHGFLA FAEIHPDYYQ IPLADRQALL KAEAEEHGRH DDGDFEPVRS RDPGERDQPV IADPAEFANE AEEVAGLAVN QADDDHAQTT AEQPADAPQA EASQTDAVQA DAVPAEPQAD EAAPEAAAKP KARRPRKPRK KAGEVEASAD EAVAEPVAVE SDETPDDGSS NGSMAAMVDT DSISEETDSR HRHDDDDDDD DDDGEKEEIE SVGAEDAMEE VPDRVRRTPR KQYRIQEVIK RRQILLVQVA KEERGNKGAA LTTYLSLAGR YSVLMPNTAR GGGISRKITN PADRKRLKEV ARDLEVPLGM GVILRTAGAN RTKVEVKRDF EYLMRLWENV RTLTLNSTAP CLVYEEGSLI KRSIRDLYNK DISEIVVSGE EGYREAKDFM KMLMPSHAKV VQPYRDIHPI FSRSGIEAQL DRMLQPQVTL KSGGYIIINQ TEALVSIDVN SGRSTREYSI EDTALQTNLE AAEEVARQLR LRDLAGLIVI DFIDMEEKRN NRSVEKKLKD CLKNDRARIQ VGRISHFGLL EMSRQRIRAS VLESTTQVCQ HCSGTGLIRS QSSVALHVLR GVEEYLLKST THDITVRTLP ETALYLLNHK RGSIVDYENR FGVSIIIDSD ASVGHQHFAI DKGEPVANPV RIETLLPLIS EPEEDDPIIE IEEEDDEDVV EAPVQAQPAS SGNAAANAAE DGNRKRKRRR RRRGKNGNGH ADGQQNAAGG DEGDDDSEGE DDAEDTAEDR DDSVEASDAS EDGNSESQRR NKRRRRGKRG GRRGRDENGV SADAEGNDTA EDDDSAEESV QADADQAVAV AEVPSDAVAD SVVVAAEVSV PATEAVKADE PVAAKPRRAR KPKASAKTEA ADSVETVTEP AAVPEAVVVE APAAAEPVAA SPVSEETSVP APAQDVSAPE PAVEAPAPEV ASEPEAVSDA SAEKPVRANR SSNVSTSEPV VTSVTNGEEA PKPKKGGWWQ KRGFL
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