| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1781 |
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| Symbol | gatB |
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| ID | 7386762 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 1485920 |
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| End bp | 1487422 |
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| Gene Length | 1503 bp |
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| Protein Length | 500 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643651082 |
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| Product | aspartyl/glutamyl-tRNA amidotransferase subunit B |
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| Protein accession | YP_002549283 |
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| Protein GI | 222148326 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0064] Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) |
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| TIGRFAM ID | [TIGR00133] glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.629208 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCTTG TCGATACGCG CACCCCCGAC CCGAAACGCC TGATTCCCGG CGCCACCGGC
GATTGGGAAA TCGTTATCGG CATGGAAGTT CATGCCCAGG TGTTGAGCCA GTCCAAGCTG
TTTTCCGGGG CCTCGACCAC CTTTGGCAAT GCACCGAACG ACAATGTGTC GCTGGTTGAT
GCGGCGATGC CCGGCATGTT GCCTGTTATC AACGAGGAAT GCGTTCGCCA GGCGGTGCGC
ACCGGTCTCG GCCTGAAGGC GAAAATCAAC AAGCGTTCAA TTTTTGACCG CAAGAACTAT
TTCTATCCCG ACCTGCCGCA GGGCTACCAG ATCTCGCAGT TCAAGGACCC GATTGTCGGG
GAAGGCAAGA TCATCATTTC GCTCGGACCC GATCGTCAGG GGAATTTCGA GGATATCGAA
ATCGGCATCG AGCGGCTGCA TCTGGAACAG GATGCCGGCA AGTCGATGCA TGACCAGCAT
CCGACCATGT CCTATGTCGA TCTGAACCGT TCCGGCGTGG CGCTGATGGA AATCGTTTCC
AAGCCGGACA TGCGCTCATC TGACGAAGCC AAGGCCTATA TGACCAAGCT GCGCTCGATC
GTGCGCTATC TCGGCACCTG CGACGGTAAT ATGGACGAAG GCTCGATGCG CGCCGACGTT
AACGTTTCGG TGCGCAAGCC GGGCGGCGAA TTCGGCACGC GCTGCGAAAT CAAGAACGTC
AACTCCATCC GGTTCATCGG TCAGGCCATT GAATATGAAG CTCGTCGCCA GATCGCCATT
TTGGAAGACG GCGGCTCGAT TGATCAGGAA ACCCGGCTGT TTGATCCGGG CAAGGGCGAG
ACCCGCTCGA TGCGCTCCAA GGAGGACGCG CATGATTATC GATATTTCCC CGATCCCGAC
TTGTTGCCGC TGGAATTCGA CGATGCCTTC GTGCAGGCCT TGAAGAAGGA TCTGCCGGAA
TTGCCCGACG ACAAGAAGGC GCGTTTTGTC GCCTCCCTGG GCCTTTCCGT CTATGATGCT
TCGGTGCTGG TGTCTGAAAA GGCGATTGCC GATTATTACG AAGCCGTGGC TGCGGGCCGC
GACGGCAAGA TTGCCGCCAA CTGGGTTATC AACGACCTGC TGGGTGCCTT GAACAAAGCC
GGCAAAGGCA TTGAAGAGAC TCCGGTTTCA CCTGCCCAGC TCGGCGGCAT TATCGATCTG
ATCAAGGCCG AGACCATTTC CGGCAAGATC GCCAAGGACC TGTTTGAAAT CGTATTCAAC
GAAGGCGGTG ATCCCGCCGA TATCGTTGAG AGCCGTGGCA TGAAACAGGT GACCGACACC
GGCGCCATCG AAAAGGCTGT GGATGAAATC ATCGCCGCCA ATCCGGATCA GGTCGCCAAG
GTGCTGGCCA AGCCGACGCT GGCTGGCTGG TTTGTCGGTC AGGTGATGAA GGCGACCGGT
GGCAAGGCCA ATCCGCAGGC GGTGCAGGCG CTGGTCAAGG CCAAGCTCGG CCTGGAGGAG
TAA
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| Protein sequence | MTLVDTRTPD PKRLIPGATG DWEIVIGMEV HAQVLSQSKL FSGASTTFGN APNDNVSLVD
AAMPGMLPVI NEECVRQAVR TGLGLKAKIN KRSIFDRKNY FYPDLPQGYQ ISQFKDPIVG
EGKIIISLGP DRQGNFEDIE IGIERLHLEQ DAGKSMHDQH PTMSYVDLNR SGVALMEIVS
KPDMRSSDEA KAYMTKLRSI VRYLGTCDGN MDEGSMRADV NVSVRKPGGE FGTRCEIKNV
NSIRFIGQAI EYEARRQIAI LEDGGSIDQE TRLFDPGKGE TRSMRSKEDA HDYRYFPDPD
LLPLEFDDAF VQALKKDLPE LPDDKKARFV ASLGLSVYDA SVLVSEKAIA DYYEAVAAGR
DGKIAANWVI NDLLGALNKA GKGIEETPVS PAQLGGIIDL IKAETISGKI AKDLFEIVFN
EGGDPADIVE SRGMKQVTDT GAIEKAVDEI IAANPDQVAK VLAKPTLAGW FVGQVMKATG
GKANPQAVQA LVKAKLGLEE
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