| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1753 |
|---|
| Symbol | |
|---|
| ID | 7386742 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 1463873 |
|---|
| End bp | 1465057 |
|---|
| Gene Length | 1185 bp |
|---|
| Protein Length | 394 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 643651062 |
|---|
| Product | MFS permease |
|---|
| Protein accession | YP_002549263 |
|---|
| Protein GI | 222148306 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.221329 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGACA CCAGAGACCC TGTTACCGGA CATCGTGAAG AGATCCATTG GCCATCGCTG
ATTGCCGCAG TCTCATCGAT TTCCGCTGTG GGCATTGCCA TCGGGCTTGG ATTGCCGCTG
CTCAGCATCA TTCTGGAAAA ACGCGGCATT CCCTCCACCC TGATCGGGCT GAATTCAGCC
ATGGCAGGCG TTGCGGCGAT GATTGCCGCG CCAATCACCA CCAGGCTCGC GCACCGTGTC
GGGGTGGCGC AGACCATGAT CTGGGCGGTG CTGCTGGCAG CGCTCAGTTC GCTCGGCTTC
TATTACGCCG AAGCCTTCTG GATGTGGTTT CCCCTGCGAC TGGTGTTTCA CGGCGCCACG
ACGACATTGT TCATCCTGTC GGAATTCTGG ATCAATGCGG CCGCCCCCCC GTCGCGGCGC
GGGCTGGTGC TCGGCATTTA TGCCACGGTC CTATCGGTCG GTTTTGCAGC AGGCCCCTTG
CTGTTTTCGA TTGTCGGCAG TGAAGGCGTA TTGCCCTTTG CCATCGGTGC GGTTGCCATC
CTCATGGCAG CGGTGCCGAT CTTCGTTGCC CGCAACGAAA GCCCGGCGCT GGATGAAAAG
CCAGAGATGC ATTTCTTCCG CTATATCTTC CTGGTGCCAA CCGCCACAGC CGCCGTCTTC
GTGTTCGGCG CGGTGGAAGT CGGTGGACTG TCACTGATGC CCGTCTATGC CACCCGTATC
GGCTTCACAG AGGCCCAGTC AGCCCTGCTG CTCACTGTGA TGGGGGTTGG CAATATGGTG
TTCCAGATCC CGCTTGGCAT GCTCTCCGAC AAGCTTAGGG ATCGCCGCTT GCTGCTCGGC
GCCCTGGCGA CGGTCGGTCT GATCGGATCG CTGCTGCTGC CGCTGATCTC CCATAGCTGG
ATGGCGATGG CCGTCATCCT GCTATTCTGG GGCGGCTGCG TGTCGGGCCT CTACACAATC
GGCCTCAGTC ATCTCGGCTC CCGACTCACA GGCTCAGACC TTGCCGCCGC CAATGCCGCC
TTCGTTTTCT GCTACGCCGT TGGCACGGTG GCCGGACCAC AAGTGGTGGG TGCAGCGATT
GACATGGGCG GAAATGCCGG TTTTGCCTGG TCGATTGCCG GCTTCTTTGC GTTATATGTG
GTTCTTTCCG TCGCACGATT GTTTTTCAAG GGTGTGCGGG GTTGA
|
|---|
| Protein sequence | MSDTRDPVTG HREEIHWPSL IAAVSSISAV GIAIGLGLPL LSIILEKRGI PSTLIGLNSA
MAGVAAMIAA PITTRLAHRV GVAQTMIWAV LLAALSSLGF YYAEAFWMWF PLRLVFHGAT
TTLFILSEFW INAAAPPSRR GLVLGIYATV LSVGFAAGPL LFSIVGSEGV LPFAIGAVAI
LMAAVPIFVA RNESPALDEK PEMHFFRYIF LVPTATAAVF VFGAVEVGGL SLMPVYATRI
GFTEAQSALL LTVMGVGNMV FQIPLGMLSD KLRDRRLLLG ALATVGLIGS LLLPLISHSW
MAMAVILLFW GGCVSGLYTI GLSHLGSRLT GSDLAAANAA FVFCYAVGTV AGPQVVGAAI
DMGGNAGFAW SIAGFFALYV VLSVARLFFK GVRG
|
|---|
| |