| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1742 |
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| Symbol | dnaE |
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| ID | 7386734 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 1452953 |
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| End bp | 1456492 |
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| Gene Length | 3540 bp |
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| Protein Length | 1179 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643651054 |
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| Product | DNA polymerase III subunit alpha |
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| Protein accession | YP_002549255 |
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| Protein GI | 222148298 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.209003 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTGGCGA TCTTCAGTGC ACAGCGGCGA CAAGCAAGCA GGATGGATGC AATGAGTGAT
ATGGGCGCAA GCGGACAAGC TGTAGTGAAT GCGGGTCCAG GTTTCGTCCA TTTAAGAGTG
CATTCGGCCT ATTCGCTGCT GGAAGGTGCG CTGCCGCTGA AGAAGATCCT GAGCAAGGTT
GCCTCTGACC AGCAACCGGC CATTGCCATT ACCGATACCA ATAACCTGTT CATAGCGCTC
GAGTTTTCCC AGAAGGCGCT CAGCGATGGC TTGCAGCCGA TCATTGGCTG TCAATTGTCC
ATCGATATGG AAGACGCCAA TGAGGAAAAG CGGGGCAATA GCTCTCTTGC CAAATATCCG
GCCATTGTGC TTCTCGCCGC CGATCCGGCG GGTTATGAGC GGCTGGTAGA CTTGGTCAGC
CGTGCCTATC TCCAGGGCGA TAATACGCAG TCTGTGCATA TCACCGCCTC CTGGTTAGAA
GAGATCGGTA CGGATGGCCT GATCGCCCTG ACGGGTGCAA CAGGCGGTCC GGTCGATCTG
CCGGTGAAGG ACGGTCATCA CGCCCAGGCG CTGTCGCGGC TTCAGACGCT CAAATCCCTG
TTCGGGGATC GGCTTTATAT CGAATTGCAG CGCCACCAAG GTTATGACCG TGTGCATGAA
AGCCGGATGA TCGCGCTCGC TTATGATCAT GATATTCCAT TGGTTGCCAC CAATGAGGCC
TTCTTTCCGA GCCGTGACGA TTATGATGCC CATGACGCGC TGATGGCCGT TGCCCATAAT
GCCATCGTGT CCGACGACCG GCGGTTTCGT CTGACCCCGG ATCACTATCT GAAAAGCCGC
AAGGAAATGC AGACCTTGTT TAGGGATCTG CCGGAAGCGC TTGAAAACAC GGTGGAGATA
GCCAGCCGCT GTTCTTTCGT TCTCGACACC CGCAACCCTA TACTGCCGCG CTTTACCGGC
GGTAGCGACG ATCCTGAAGA GGCTGAGCGC GCCGAGGCTG GGGAATTGCG CCGCCAGGCC
ATCGAGGGAT TGGATGACCG GCTGGCAAAG CTTGGCATGG CACCAGGCTA TGATGAGAAG
GAATATCGGG ACCGGCTGGA TTTCGAGCTC GGCGTCATCG AGCGGATGAA ATTTCCCGGC
TACTTCCTGA TCGTTGCCGA CTTCATCAAA TGGGCCAAGA GCCAGGACAT TCCCGTTGGC
CCTGGCCGTG GTTCGGGTGC GGGTTCGCTG GTCGCCTATG CCTTGACCAT TACCGATGTC
GATCCGCTGC GGTTCTCCTT GCTGTTCGAA CGCTTTCTCA ATCCTGAGCG CGTCTCGATG
CCCGACTTCG ACATCGACTT CTGCCAGGAT CGCCGTGAAG AGGTGATCCG TTATGTGCAG
CGCAAATATG GGCGCGAGCA AGTGGCGCAG ATCATCACCT TCGGGTCGCT CCAGGCCCGT
GCAGCCTTGC GCGACGTTGG CCGCGTGCTG GAAATGCCCT ATGGGCAGGT CGACAGGATC
TGTAAGCTGG TGCCGAACAA TCCGGCCAAT CCGACCCCCT TGTCCAAGGC CATCGAAGAA
GAGCCAAAGT TTCAGGAGGA GGCGGAGAAG GAGCCTGTCG TTGCCCGTCT TCTGGATATC
GCCCAGAAGA TCGAGGGGCT TTATCGCCAC GCCTCGACCC ATGCCGCCGG TATCGTTATC
GGTGACCGAC CGCTGTCCAA GCTGGTACCG ATGTATCGCG ATCCGCGCTC GGATATGCCG
GTCACCCAGT TTAACATGAA GTGGGTGGAG CAGGCCGGGC TGGTCAAGTT CGACTTTCTC
GGATTGAAGA CGCTGACAGT GCTGAAAACC GCCGTGGATT TCTGCCGGTT GCGCGATATC
GAGATTGACC TGGCGACAAT TCCGCTGGAC GACGAAAAAA CCTATCAAAT GCTGTCACGC
GGTGAGACCG TCGGTGTGTT CCAGGTGGAA AGTGCCGGCA TGCGCAAGGC ACTGATCGGT
ATGCGACCCG ACTGTATCGA GGATATTATC GCGCTGGTGG CGCTCTATCG TCCGGGGCCG
ATGGAGAATA TTCCGGTCTA CAATGCCCGT AAGCATGGTG AGGAGGAGAT CGAATCGATC
CATCCGACCA TCGATTACCT TCTGAAGGAA ACCCAGGGGG TTATCGTCTA TCAGGAGCAG
GTCATGCAGG TGGCCCAGGT TCTGTCGGGC TATTCGCTCG GTGAAGCGGA TCTTCTGCGC
CGTGCCATGG GTAAGAAGAT CAAGGAGGAA ATGGACAAGC AGCGCGCCCG TTTCGTCGAT
GGTGCGGTGA AGAATGGTGT CTCAAAGCCC CAGGCCGACA ACATTTTCGA CCTGCTGGCG
AAATTTGCCA ATTACGGCTT CAACAAATCC CACGCCGCAG CCTACGCTAT TGTCTCCTAC
CAGACCGCCT ATATGAAGGC CCATTATCCG GTGGAGTTTC TGGCAGCGTC GATGACACTC
GATATGGCCA ATACCGAAAA ACTGGTGGAT TTCCGCCAGG ATGCCGGGCG TCTCGGTATT
GAGGTCGTGC CACCGTCGGT TCAGACTTCT TTCCGGCACT TCCAGACGGG GCCGAACAGG
ATTTACTATT CGCTGGCTGC CTTGAAGGGC GTCGGCGATG CAGCCGTCGA GCATATCGTA
ACGGTCCGCG GCGATACGCC CTTTGCCGAT CTCGAGGATT TTTGTCTACG GATCGACCCG
AAGCAGATCA ATCGCCGGGT ATTTGAAAGC CTGATTTTTG CCGGTGCCTT CGATTGTTTT
GGCCGCGACC GTCCTGAATT GCTGGCTGGC ATGGACCGGA TTATCGGCTA TGCGCAACGC
GCCCAGGAAA ATGCCGTCAG CGGCCAGTCG GACATGTTCG GCTCTGGCGG CGCCACAGGG
CCGGAGCGGA TTTCCTTTCC GACCTATACA CCCTGGCTGC CATCCGAAAA GTTGATGCGG
GAGTTTCAGG TTCTGGGCTT TTATCTCTCG GCCCATCCGC TCGACACCTA TAAACCGCTG
CTGGAAAAGA TGCGCGTGCA GAATTTCGTC GATTTTTCCG GCGCGGTGCG TCAAGGCGCG
ACGGCGGGTC GGCTGGCCGG GACGGTGATT TCAAAGCAGG AGCGCAAGAC GCGAACCGGA
AACAAAATGG GCATCGTGAC CTTTTCGGAT GCCACTGGCC AGTTCGAGGC TGTGCTGTTT
TCGGAAGGCT TGAACCAGTA TCGCGACCTG CTCGAATCGG GCAAGTCACT GGTGATCACG
GTTGCCGCAG AAGAACGGCC GGAAGGCATT GGTCTTCGTA TCCAGACGGC GCAGTCTTTG
GAAGAAAAAT CCTTGCAGAT GCAAAAGACG TTGCGTGTCT ATCTGCGCGA TTCCAGTCCC
TTGCGGGCGC TCGCCGCCCA TCTCAATACC AAGGGTGATG GACTGGTCTC GTTCGTGGTG
ATCAAGGAGG ATGGACGCCG CGAAATTGAA GTCGAACTCA ATCAACGGTT CCGTATCACC
CCGGAAATCG CCGCGGCCAT GCGGTCCGCG CCGGGTGTGG TGGATGTTGA ATTGGTATAG
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| Protein sequence | MVAIFSAQRR QASRMDAMSD MGASGQAVVN AGPGFVHLRV HSAYSLLEGA LPLKKILSKV
ASDQQPAIAI TDTNNLFIAL EFSQKALSDG LQPIIGCQLS IDMEDANEEK RGNSSLAKYP
AIVLLAADPA GYERLVDLVS RAYLQGDNTQ SVHITASWLE EIGTDGLIAL TGATGGPVDL
PVKDGHHAQA LSRLQTLKSL FGDRLYIELQ RHQGYDRVHE SRMIALAYDH DIPLVATNEA
FFPSRDDYDA HDALMAVAHN AIVSDDRRFR LTPDHYLKSR KEMQTLFRDL PEALENTVEI
ASRCSFVLDT RNPILPRFTG GSDDPEEAER AEAGELRRQA IEGLDDRLAK LGMAPGYDEK
EYRDRLDFEL GVIERMKFPG YFLIVADFIK WAKSQDIPVG PGRGSGAGSL VAYALTITDV
DPLRFSLLFE RFLNPERVSM PDFDIDFCQD RREEVIRYVQ RKYGREQVAQ IITFGSLQAR
AALRDVGRVL EMPYGQVDRI CKLVPNNPAN PTPLSKAIEE EPKFQEEAEK EPVVARLLDI
AQKIEGLYRH ASTHAAGIVI GDRPLSKLVP MYRDPRSDMP VTQFNMKWVE QAGLVKFDFL
GLKTLTVLKT AVDFCRLRDI EIDLATIPLD DEKTYQMLSR GETVGVFQVE SAGMRKALIG
MRPDCIEDII ALVALYRPGP MENIPVYNAR KHGEEEIESI HPTIDYLLKE TQGVIVYQEQ
VMQVAQVLSG YSLGEADLLR RAMGKKIKEE MDKQRARFVD GAVKNGVSKP QADNIFDLLA
KFANYGFNKS HAAAYAIVSY QTAYMKAHYP VEFLAASMTL DMANTEKLVD FRQDAGRLGI
EVVPPSVQTS FRHFQTGPNR IYYSLAALKG VGDAAVEHIV TVRGDTPFAD LEDFCLRIDP
KQINRRVFES LIFAGAFDCF GRDRPELLAG MDRIIGYAQR AQENAVSGQS DMFGSGGATG
PERISFPTYT PWLPSEKLMR EFQVLGFYLS AHPLDTYKPL LEKMRVQNFV DFSGAVRQGA
TAGRLAGTVI SKQERKTRTG NKMGIVTFSD ATGQFEAVLF SEGLNQYRDL LESGKSLVIT
VAAEERPEGI GLRIQTAQSL EEKSLQMQKT LRVYLRDSSP LRALAAHLNT KGDGLVSFVV
IKEDGRREIE VELNQRFRIT PEIAAAMRSA PGVVDVELV
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