Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_1741 |
Symbol | lolD |
ID | 7386733 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 1451733 |
End bp | 1452422 |
Gene Length | 690 bp |
Protein Length | 229 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 643651053 |
Product | ABC transporter nucleotide binding/ATPase protein (lipoprotein) |
Protein accession | YP_002549254 |
Protein GI | 222148297 |
COG category | [V] Defense mechanisms |
COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00216433 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGAACA ACCCTGTTCT TGAAATTTCG GAGGTTTCGC GCACCTATGG GGAAGGCGAA ACCAAGCTTT CCATTCTGAA AGGCGCCGGC CTAAAATTAT ACGAAGGCGA AACCGTCGCT CTCGTTGCTC CGTCGGGCAC GGGCAAGTCC ACCCTGCTGC ATATTGCCGG GCTGCTGGAA CATCCGACGG ATGGCGACGT GCTGATTGGC GGCACCCGTT GCAATGAGTT GTCCGAGGAA GGCCGCACGG CCATGCGCCG CACCAGCATT GGCTTCGTCT ATCAGTTCCA TCACCTGTTG CCGGAGTTTT CGGCGCTTGA AAACATCATG ATGCCGCAGA TGATTGCGGG CTTGAGCATT CCGGAAGCCA GCAAGCGTGC CAAGGCTTTG CTTGATTACA TGCGCATCGG CCATCGCGGT GATCACCGTC CCGCCGAACT TTCTGGCGGC GAACAGCAGC GCGTGGCCAT TGCCCGTGCG GTTGCCAATG CGCCGCTGTT GCTGTTGGCG GACGAGCCGA CCGGCAATCT CGATCCGGAA ACTGCAGCTT ATGTGTTTTC CGCGTTGGAA GCGCTGGTGC GCCAGTCCGG TCTTGCGGCG TTGATTGCGA CCCATAATCA CGAACTGGCC CGGCGGATGG ACCGCTGCGT CACTCTCCAG GACGGCAGAA TCGTCGATTT CGATTTGTAA
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Protein sequence | MANNPVLEIS EVSRTYGEGE TKLSILKGAG LKLYEGETVA LVAPSGTGKS TLLHIAGLLE HPTDGDVLIG GTRCNELSEE GRTAMRRTSI GFVYQFHHLL PEFSALENIM MPQMIAGLSI PEASKRAKAL LDYMRIGHRG DHRPAELSGG EQQRVAIARA VANAPLLLLA DEPTGNLDPE TAAYVFSALE ALVRQSGLAA LIATHNHELA RRMDRCVTLQ DGRIVDFDL
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