Gene Avi_1715 details

Gene Information

• Locus tag: Avi_1715
• Symbol: nouD
• ID: 7386713
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 1429508
• End bp: 1430698
• Gene Length: 1191 bp
• Protein Length: 396 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 643651033
• Product: NADH dehydrogenase subunit D
• Protein accession: YP_002549234
• Protein GI: 222148277
• COG category: [C] Energy production and conversion
• COG ID: [COG0649] NADH:ubiquinone oxidoreductase 49 kD subunit 7
• TIGRFAM ID: [TIGR01962] NADH dehydrogenase I, D subunit

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACTGAAC ATTCCGTCCG TAACTTCACG ATCAATTTCG GCCCCGAACA TCCTTCCGCA 
CACGGCGTTT TGCGTCTTGT GCTGGAGCTG GACGGTGAAA TCGTCGAGCG TGTCGATCCC 
CATATCGGCC TCTTGCACCG TGGTACCGAA AAGCTGATTG AAGCCAAGAC CTACTTGCAG 
GCATTGCCCT ATTTCGACCG GCTGGACTAT GTCGCGCCGA TGAACCAGGA ACATGCCTAT 
TGCTTGGCGG TGGAAAAGCT CCTCGGCCTG GAAATTCCGA TCCGCGGCCA GCTGATCCGG 
GTTCTCTATT CCGAAATTGG CCGTATCCTG TCGCATATCA TGAACGTCAC CACGCAGGCG 
ATGGACGTCG GTGCCATGAC GCCACCGGTC TGGGGCTTCG AAGAGCGCGA AAAACTGATG 
GTGTTCTATG AGCGGGCTTC TGGCGCGCGC ATGCATGCCG CCTATTTCCG TCCCGGTGGC 
ATTCACCAGG ATATTCCGGC CCAGCTGGTC GAGGATATCG GTGCCTGGTG CGATCCTTTC 
CTGAAAGTTC TCGATGATAT CGAGGGACTG TTGACCGAGA ACCGGATTTT CAAGCAGCGC 
AATGTCGATA TCGGCGTCGT CAGCCTGGAA GATGCCTGGA AATGGGGCTT CTCAGGTGTG 
ATGGTTCGCG GTTCGGGTGC GGCCTGGGAT TTGCGCCGCT CGCAGCCTTA CGAATGCTAT 
TCCGATATGG AATTCGATAT TCCGGTCGGT AAGAATGGCG ACTGCTACGA CCGCTATCTG 
ATCCGCATGA TGGAAATGCG CGAATCGGTG AAGATCATGA AGCAATGCGT CAATCGCCTG 
CTCGGCGATG CGCGCATTGG CCCGGTTTCT TCTGTGGATG GCAAGGTTGT ACCGCCGAAA 
CGGGGTGAGA TGAAGCGGTC GATGGAAGCG CTCATCCATC ACTTCAAGCT TTACACTGAA 
GGTTTCCACG TACCGGCTGG CGAAGTTTAT GCGGCCGTCG AGGCGCCGAA GGGTGAATTC 
GGGGTCTATC TGGTAGCGGA CGGCACAAAC AAGCCGTATC GCTGCAAGAT CCGCGCTCCT 
GGGTTCGTGC ATCTGCAAGC CATGGACTTC ATGTCGCGCG GCCATCAGCT TGCTGACGTA 
ACGGCGGTGC TGGGGTCTCT CGACATCGTG TTTGGTGAGG TGGATCGTTG A 

 

Protein sequence

MTEHSVRNFT INFGPEHPSA HGVLRLVLEL DGEIVERVDP HIGLLHRGTE KLIEAKTYLQ 
ALPYFDRLDY VAPMNQEHAY CLAVEKLLGL EIPIRGQLIR VLYSEIGRIL SHIMNVTTQA 
MDVGAMTPPV WGFEEREKLM VFYERASGAR MHAAYFRPGG IHQDIPAQLV EDIGAWCDPF 
LKVLDDIEGL LTENRIFKQR NVDIGVVSLE DAWKWGFSGV MVRGSGAAWD LRRSQPYECY 
SDMEFDIPVG KNGDCYDRYL IRMMEMRESV KIMKQCVNRL LGDARIGPVS SVDGKVVPPK 
RGEMKRSMEA LIHHFKLYTE GFHVPAGEVY AAVEAPKGEF GVYLVADGTN KPYRCKIRAP 
GFVHLQAMDF MSRGHQLADV TAVLGSLDIV FGEVDR