Gene Avi_1714 details

Gene Information

• Locus tag: Avi_1714
• Symbol: nuoC
• ID: 7386712
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 1428886
• End bp: 1429488
• Gene Length: 603 bp
• Protein Length: 200 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 643651032
• Product: NADH dehydrogenase subunit C
• Protein accession: YP_002549233
• Protein GI: 222148276
• COG category: [C] Energy production and conversion
• COG ID: [COG0852] NADH:ubiquinone oxidoreductase 27 kD subunit
• TIGRFAM ID: [TIGR01961] NADH (or F420H2) dehydrogenase, subunit C

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTGAAG CCCTGCAAGT GCTGGCATCC CACATCACCG AAAACAGCGG TGGTCTTGCT 
TTGTCGAGCA CCGTTGCCTT TGGTGAACTG ACGGTCACCA CGACCGTCGA AAATATCTAT 
GCGCTGGTGA CTTTCCTGCG TGACGACGCC CGTTGCGGCT TCATCAATAT TATCGACATC 
TGCGGTGTGG ATTATCCCGA GCGTGTCGAG CGTTTCGAGG TTGTCTATCA CTTCCTGGCG 
CCGAAGCAGA ACCAGCGCAT CCGCGTCAAG CTGTCCACCA GCGAAGACAA GCCGGTTCCG 
TCGATCTGTC CGCTGTTTCC GGGTGCCGAC TGGTTTGAGC GCGAGGCCTG GGATCTCTAT 
GGCGTGATGT TTACCGGTCA TCCGGATCTG CGTCGTCTGC TGACTGATTA CGGTTTTGAA 
GGCCATCCGC TGCGCAAGGA TTTTCCGCTG ACAGGCTTTG TTGAAGTCCG CTATGATGAC 
ACGGTCAAGC GGGTGGTTTA TGAACCGGTT GAGTTGAAGC AGGAATTCCG TAGTTTCGAC 
TTTCTCTCGC CTTGGGAAGG CACGGATTAC GTGCTGCCCG GCGATGAAAA AGCCGCGAAG 
TAA 

 

Protein sequence

MSEALQVLAS HITENSGGLA LSSTVAFGEL TVTTTVENIY ALVTFLRDDA RCGFINIIDI 
CGVDYPERVE RFEVVYHFLA PKQNQRIRVK LSTSEDKPVP SICPLFPGAD WFEREAWDLY 
GVMFTGHPDL RRLLTDYGFE GHPLRKDFPL TGFVEVRYDD TVKRVVYEPV ELKQEFRSFD 
FLSPWEGTDY VLPGDEKAAK