Gene Avi_1713 details

Gene Information

• Locus tag: Avi_1713
• Symbol: nuoB
• ID: 7386711
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 1428281
• End bp: 1428868
• Gene Length: 588 bp
• Protein Length: 195 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 643651031
• Product: NADH dehydrogenase subunit B
• Protein accession: YP_002549232
• Protein GI: 222148275
• COG category: [C] Energy production and conversion
• COG ID: [COG0377] NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases
• TIGRFAM ID: [TIGR01957] NADH-quinone oxidoreductase, B subunit

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGAGTGA GCCAAAGCGA TCACCAGACC CTGGTTGCAC CACAGCCCAA GGGTATTCTG 
GACCCTGCCA CCGGCAAGCC GGTTGGCAAT GACAGCACTT TTTTCGGCGA GATCAATGAT 
GAACTGGCTG ACAAGGGGTT TCTGGTCACC TCAACCCAGG CTCTGATCAC CTGGGCGCGT 
ACCGGGTCAT TGATGTGGAT GCAGTTTGGT TTGGCCTGCT GCGCCGTCGA AGGCCTGATG 
CAGGCGTCCG GCCCGCGTTA CGACATGGAG CGCTTCGGCG TTGCACCGCG TGCATCTCCG 
CGCCAGTCGG ACGTGATGAT TGTTGCGGGA ACCCTGACCA ACAAGATGGC GCCCGCCTTG 
CGCAAGGTCT ATGACCAGAT GCCGGAGCCG CGCTATGTGA TCTCCATGGG TTCCTGTGCC 
AATGGCGGCG GCTACTATCA CTATTCCTAT TCCGTGGTCC GGGGTTGTGA CCGGGTCGTG 
CCTGTCGACA TTTATGTGCC GGGCTGTCCC CCCACGGCAG AGGCGCTGCT CTATGGCGTC 
CTGCTGCTTC AGAAGAAAAT CCGCCGCACC GGCACGATCG AGCGCTAA 

 

Protein sequence

MGVSQSDHQT LVAPQPKGIL DPATGKPVGN DSTFFGEIND ELADKGFLVT STQALITWAR 
TGSLMWMQFG LACCAVEGLM QASGPRYDME RFGVAPRASP RQSDVMIVAG TLTNKMAPAL 
RKVYDQMPEP RYVISMGSCA NGGGYYHYSY SVVRGCDRVV PVDIYVPGCP PTAEALLYGV 
LLLQKKIRRT GTIER