Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_1704 |
Symbol | fadD |
ID | 7386706 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 1421742 |
End bp | 1423340 |
Gene Length | 1599 bp |
Protein Length | 532 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 643651023 |
Product | long-chain-fatty-acid-CoA-ligase |
Protein accession | YP_002549227 |
Protein GI | 222148270 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.49493 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCGTACT ATGGTGGCGC AGGTTTGCGC GAAACTTCGG CGTTTGCTGG CATGGTCGCG GAGGATCCGG TCCGGTTCCG CGCCAATAGC GGTCCAGATC GGCCAGCCGT CATGGAACTG GCAACCGGGC AATCATTGAC ATTTTCTGAA TTCGATACGC TGATCGGGCG ATGCGCCGCC GCTCTTGACG ATGTGATCGC AAGGGCAGGG ACGGGGCAGG ACAGCCCAGC CCGTATTGCC TATCTCGGGC GCAATTCCAT TGCCCAATTC GCGGTTTGTT TTGCCTGCCA GCGGATCGGT GCGATCTTCG TGCCATTGAA CTGGCGCTTG AGCGCCCGAG AAATTTCGCT GATTCTTGCC GACTGCGAAC CGACGCTATT GCTGTACGAT GCGGAATTTG CCGAAGCCGG TAGTAGCTTC GAGGTCGAAA GCCTTGATGT GACCGGTAAG GGAGGCTTTC TGGATAAGGC CTCGGTTTTG GAGCCAATCG CACCTCGCTA TTCATCTGCC GACCGTACAT GCGTGATTCT CTACACATCC GGGACGACAG GCGTGCCAAA GGGCGTGCTG CTTAACGCCC GCAATCTGTT TTTCTCCGCC TTGAATTTTG CTTTCGTCGG TGAGGTGACG CCGGATTCGG TCGTGCTTTG CGACTTGCCG TTTTTCCATA CGATCGGGTT GGTGGCCCTG GCGCGCACCG CAATGGTGAT GGGCGCCCGA CTGGTCATTT CTGACCGCTT CATTGCTGAA CGCACGATTG CCACCATGGC GGACACCCAA ATCGGCGTCA GCCATTATTG TGGTGTGCCG CAAATGGCCA GTACGTTGCG GAACTCGCCG AATTGGAACC CGGCTGCTTT GCAGGGTTTG AAGGCGATCT TTCTGGGTGG CGCGCCTTTG CCACCGGTGC TGATTGAGCG TTTTCTCGAT GACGGCATTG CGCTGGTCAA TGGCTATGGG ATGAGCGAAA CCGGCACGGC CTATCATATG CCGCTCGACC GCCAACTCAT CGCCCGTCAT CCGGGTAGTA TCGGTTTTGC GGCCCCCTTG CTTGAAACGC GGGTTGTTGA TTTCGATGGT GCCGATGTCA CCGATGGCGG GATCGGTGAA ATCTGGCTAC GAGGACCAAG CGTCACAGAG GGCTATTGGA ACCGTCCGGA CCTTACCGAG GCTGCCTTCA CCGATGGTTG GTTTCGCAGC GGCGATATGG CGCGGGTCCA GGACGGTGTC GTCTATCTCG CTGATCGCCT GAAGGACATG TATATCAGCG GCGGTGAAAA CGTCTATCCG GCTGAGGTTG AAGCGGCTAT TGCCGCCCAT CCCGGCGTTG CCGATGTCGC AGTCATGGGC CTTGCCCATG CCGAATGGGG CGAGGTCGGC CTGGCACTGG TCGTCGCTGG CAACGACGGC CTACGTGATC ACGATATCCT ACGCCATTGC GCTGATCGGC TTGCCAGCTT CAAACGGCCC AAACACGTGG TGTTTGTGGA TGCCATTCCC CGTTCGGCTT CTGGCAAGGT GCAGAAGCAC ATTTTGCGCC AATCCTATAC TCACCTTTCA TCCAGTTCGA CACCGGCGTC CGGACAGCCC GGCGCATAA
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Protein sequence | MSYYGGAGLR ETSAFAGMVA EDPVRFRANS GPDRPAVMEL ATGQSLTFSE FDTLIGRCAA ALDDVIARAG TGQDSPARIA YLGRNSIAQF AVCFACQRIG AIFVPLNWRL SAREISLILA DCEPTLLLYD AEFAEAGSSF EVESLDVTGK GGFLDKASVL EPIAPRYSSA DRTCVILYTS GTTGVPKGVL LNARNLFFSA LNFAFVGEVT PDSVVLCDLP FFHTIGLVAL ARTAMVMGAR LVISDRFIAE RTIATMADTQ IGVSHYCGVP QMASTLRNSP NWNPAALQGL KAIFLGGAPL PPVLIERFLD DGIALVNGYG MSETGTAYHM PLDRQLIARH PGSIGFAAPL LETRVVDFDG ADVTDGGIGE IWLRGPSVTE GYWNRPDLTE AAFTDGWFRS GDMARVQDGV VYLADRLKDM YISGGENVYP AEVEAAIAAH PGVADVAVMG LAHAEWGEVG LALVVAGNDG LRDHDILRHC ADRLASFKRP KHVVFVDAIP RSASGKVQKH ILRQSYTHLS SSSTPASGQP GA
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