Gene Avi_1695 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_1695 
Symbol 
ID7386699 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp1411849 
End bp1413111 
Gene Length1263 bp 
Protein Length420 aa 
Translation table11 
GC content60% 
IMG OID643651016 
ProductGGDEF family protein 
Protein accessionYP_002549220 
Protein GI222148263 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.037923 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGCTCGACA TCAAGACAGC TTTTTTGATG TGGGGGACCC AGGCAATCAC GCTGGCGGTC 
CTGCTGATCA CCATATGGCT GCGCGCGCCA CGGCATCGCT ATTATGGTTA CATGGCCATC
GGGTTTGCCT GTCACGGCAT TGGCGCAATG CTGATCGCGC TTCGCAACGA CCTGCCGCCG
CCTGTGGCAA TTTACGGCGG CAATGCCATT GTGCTGTGCG GCTTCTGTTT CTGGATCTGC
GCGTTGCGGC TGTTTGACGG GCGCAAACCC GGCTGGTGGA TCGCGGCACC GCTGCTGCTC
TGGGGCCTCG TCCTGATCCA TCCGATCATA CGGGACACCT ACGCCTATCG TCTGGCGACC
CATCAATTTG CCAGCATGCT TTGTTTCGTG ATGCTCGCGG TCACGGCCAT GACGTCACGC
ATGACAGCAC GGAAATATCG TCGGATGCTC GCGGCCTTGT GGAGCCTGCA AGCGCTGTCA
TGTGCGGTGA TCGGTTCCGC CAGCCTGATC GGCATGCCGG AAGGCCAGCA CGAGGTTGCC
CTCAGCGATT ATATCGGCCT GTTCGTCATT GTCTGCCTGG TGTCGGCCAT GGTGCTTCTG
GCCCGAATCG TCATGGACCG GAACGAACGG GAACTGAAGC AATTGTCGCG CACCGATCCC
CTCACCGGCG CGCTGAACCG GCGTGGTCTG ATCGAAACCG TAGGCGAGCT GAAACACACG
GTCGCCAGAG ACCGGCTTCT GGCACTTCTG GTGTTCGATC TCGATTATTT CAAACATATC
AATGATACAT TCGGCCATCA GGCGGGCGAT ACTGTCTTGT CCAGCTTTGC GCAGATGACA
GGTGGCGCGC TTGGCAATGA CGCGATTTTC GCCCGCTCCG GCGGCGAGGA ATTCTGCGCC
GTCATGGCTG TTGCGGACCT GCGCCAAGCT GCCGGTGTTG CCGAGCGGAT CCGCTACATG
ATTGCCTCAA CACCGATCAC CACAGAACAG GGCGTTGTCA GGCTGACCAC CAGCATTGGC
CTCTCAGCGG CCACTGTCGA GGCCTTCGAC TTCGATACAG CCATGCGTCA GGCCGATCAT
GGCCTCTATA CGGCCAAGGC AGATGGCCGT AACAGAACTG CCGTGGCACG CGGGGAAACC
GTTTTTTGCC TGACGCCCAA CGAGGAACGC GGCACACCGG CGGCAATCGA CAATGAAGCA
GACCGTCAGG TCGCAGCCCT GCGCCGTCTC AGCCAGCGTT CGACACAGCA ACATCTCGAG
TGA
 
Protein sequence
MLDIKTAFLM WGTQAITLAV LLITIWLRAP RHRYYGYMAI GFACHGIGAM LIALRNDLPP 
PVAIYGGNAI VLCGFCFWIC ALRLFDGRKP GWWIAAPLLL WGLVLIHPII RDTYAYRLAT
HQFASMLCFV MLAVTAMTSR MTARKYRRML AALWSLQALS CAVIGSASLI GMPEGQHEVA
LSDYIGLFVI VCLVSAMVLL ARIVMDRNER ELKQLSRTDP LTGALNRRGL IETVGELKHT
VARDRLLALL VFDLDYFKHI NDTFGHQAGD TVLSSFAQMT GGALGNDAIF ARSGGEEFCA
VMAVADLRQA AGVAERIRYM IASTPITTEQ GVVRLTTSIG LSAATVEAFD FDTAMRQADH
GLYTAKADGR NRTAVARGET VFCLTPNEER GTPAAIDNEA DRQVAALRRL SQRSTQQHLE