Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_1695 |
Symbol | |
ID | 7386699 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 1411849 |
End bp | 1413111 |
Gene Length | 1263 bp |
Protein Length | 420 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 643651016 |
Product | GGDEF family protein |
Protein accession | YP_002549220 |
Protein GI | 222148263 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.037923 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGCTCGACA TCAAGACAGC TTTTTTGATG TGGGGGACCC AGGCAATCAC GCTGGCGGTC CTGCTGATCA CCATATGGCT GCGCGCGCCA CGGCATCGCT ATTATGGTTA CATGGCCATC GGGTTTGCCT GTCACGGCAT TGGCGCAATG CTGATCGCGC TTCGCAACGA CCTGCCGCCG CCTGTGGCAA TTTACGGCGG CAATGCCATT GTGCTGTGCG GCTTCTGTTT CTGGATCTGC GCGTTGCGGC TGTTTGACGG GCGCAAACCC GGCTGGTGGA TCGCGGCACC GCTGCTGCTC TGGGGCCTCG TCCTGATCCA TCCGATCATA CGGGACACCT ACGCCTATCG TCTGGCGACC CATCAATTTG CCAGCATGCT TTGTTTCGTG ATGCTCGCGG TCACGGCCAT GACGTCACGC ATGACAGCAC GGAAATATCG TCGGATGCTC GCGGCCTTGT GGAGCCTGCA AGCGCTGTCA TGTGCGGTGA TCGGTTCCGC CAGCCTGATC GGCATGCCGG AAGGCCAGCA CGAGGTTGCC CTCAGCGATT ATATCGGCCT GTTCGTCATT GTCTGCCTGG TGTCGGCCAT GGTGCTTCTG GCCCGAATCG TCATGGACCG GAACGAACGG GAACTGAAGC AATTGTCGCG CACCGATCCC CTCACCGGCG CGCTGAACCG GCGTGGTCTG ATCGAAACCG TAGGCGAGCT GAAACACACG GTCGCCAGAG ACCGGCTTCT GGCACTTCTG GTGTTCGATC TCGATTATTT CAAACATATC AATGATACAT TCGGCCATCA GGCGGGCGAT ACTGTCTTGT CCAGCTTTGC GCAGATGACA GGTGGCGCGC TTGGCAATGA CGCGATTTTC GCCCGCTCCG GCGGCGAGGA ATTCTGCGCC GTCATGGCTG TTGCGGACCT GCGCCAAGCT GCCGGTGTTG CCGAGCGGAT CCGCTACATG ATTGCCTCAA CACCGATCAC CACAGAACAG GGCGTTGTCA GGCTGACCAC CAGCATTGGC CTCTCAGCGG CCACTGTCGA GGCCTTCGAC TTCGATACAG CCATGCGTCA GGCCGATCAT GGCCTCTATA CGGCCAAGGC AGATGGCCGT AACAGAACTG CCGTGGCACG CGGGGAAACC GTTTTTTGCC TGACGCCCAA CGAGGAACGC GGCACACCGG CGGCAATCGA CAATGAAGCA GACCGTCAGG TCGCAGCCCT GCGCCGTCTC AGCCAGCGTT CGACACAGCA ACATCTCGAG TGA
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Protein sequence | MLDIKTAFLM WGTQAITLAV LLITIWLRAP RHRYYGYMAI GFACHGIGAM LIALRNDLPP PVAIYGGNAI VLCGFCFWIC ALRLFDGRKP GWWIAAPLLL WGLVLIHPII RDTYAYRLAT HQFASMLCFV MLAVTAMTSR MTARKYRRML AALWSLQALS CAVIGSASLI GMPEGQHEVA LSDYIGLFVI VCLVSAMVLL ARIVMDRNER ELKQLSRTDP LTGALNRRGL IETVGELKHT VARDRLLALL VFDLDYFKHI NDTFGHQAGD TVLSSFAQMT GGALGNDAIF ARSGGEEFCA VMAVADLRQA AGVAERIRYM IASTPITTEQ GVVRLTTSIG LSAATVEAFD FDTAMRQADH GLYTAKADGR NRTAVARGET VFCLTPNEER GTPAAIDNEA DRQVAALRRL SQRSTQQHLE
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