| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1682 |
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| Symbol | rplM |
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| ID | 7386690 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 1403923 |
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| End bp | 1404387 |
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| Gene Length | 465 bp |
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| Protein Length | 154 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643651007 |
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| Product | 50S ribosomal protein L13 |
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| Protein accession | YP_002549211 |
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| Protein GI | 222148254 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0102] Ribosomal protein L13 |
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| TIGRFAM ID | [TIGR01066] ribosomal protein L13, bacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0124683 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTCTACCT TCGTTCAGAA GCCTGCAGAG GTGGAGAAGA AGTGGGTCAT CATCGACGCC
GAAGGGCTCG TTGTTGGTCG CCTCGCCACC GTGATCGCCA CCTATCTGCG TGGCAAGCAC
AAGGTCACGT ACACTCCCCA CGTCGATGAT GGCGACAATG TCATCGTCAT CAATGCCGAA
AAGGTTGTCC TGACCGGCAA GAAATACACC GACAAGACCT ATTACTGGCA CACCGGCTAT
CCGGGTGGCA TCAAGGAACG CACGGCGCGC CAGATCATCG AAGGCCGCTT CCCGGAGCGC
GTTCTTGAAA AGGCTGTCGA GCGCATGATT CCCCGCGGTC CGCTTGGCCG TCGCCAGATG
AAGAACCTGC GCGTTTACGC CGGGTCCGCC CACCCCCACG AAGCCCAGCA GCCTGTCGCT
CTCGACGTGG CCAAGCTGAA CAGCAAGAAC GTAAGGAGCG CCTAA
|
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| Protein sequence | MSTFVQKPAE VEKKWVIIDA EGLVVGRLAT VIATYLRGKH KVTYTPHVDD GDNVIVINAE
KVVLTGKKYT DKTYYWHTGY PGGIKERTAR QIIEGRFPER VLEKAVERMI PRGPLGRRQM
KNLRVYAGSA HPHEAQQPVA LDVAKLNSKN VRSA
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