| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1678 |
|---|
| Symbol | |
|---|
| ID | 7386687 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 1402058 |
|---|
| End bp | 1402903 |
|---|
| Gene Length | 846 bp |
|---|
| Protein Length | 281 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 643651004 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002549208 |
|---|
| Protein GI | 222148251 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00270694 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATAAAAC GGCCTTACAA TATTTGCATC GTGGAGCCGA AAGGCTTCGG ACACTCGAAA
GCCTTCGAGG AAGTCGCCGA GGCCCTCGAC TATTCCTTGA AAGAATTGGG GTATCCGACG
GCCCTTTCAG TCAACAGAGT GACCGACGAC ACCGTCAACA TCATCTTTGG GGCGCATCTC
CTCCCCTTGC AGGACCTTCA CAGCCTTCAT CCGAGCACGA TCATCGTCAA TGCCGAACCG
CTATCTGCAA CTTCAGAACG GACACGTGAG CGGGTTCTCA TCTGCCTCAA TGCCGGTTTG
GAAATCTGGG ATTACAGTCC CGCAAATATC GAGATCCTCA ACCGAATCGG TGGGCGGCCC
GTCAAATATC TGCAATTGGG CTTTCAGAAA GAACTGGACC GTATAGCGCC TGCACCGGTG
CGGGATATCG ACGTGCTTTT TTATGGCTCC ATGAATGAAC GTCGCGCAGA GATTCTCTAC
GGCTTGCAAG CCCGAGGGCT TGTCATCGAG CATCTGTTCG ATGTGTATGG ACGCGAGCGC
GATGCCTGGA TCGCCAGGTC CAAAGTGGTT TTGAACATGC ATCTGCTGGA ATCGCAGATT
TTCGAAGTCG TGCGGGTGTT CTATCTGCTC ATCAATGGCG TGGCCGTCGT CGGCGAAGTG
AATGGACCGG AAACGCTGAT TGATGAGCGG TTTGCGCAGG GCATCGTCGC CGCACCCTAT
GGTGATCTGA TCGACGTTAC GGAACAGCTG GTGCGTGATG CTGCCAGGCT CGAGAAACAA
CGCATCCTGG CCCGCGACGC CATCAAGCGT CATCCGCAAG TGACCTTCAC CCAACAGCTT
CTTTGA
|
|---|
| Protein sequence | MIKRPYNICI VEPKGFGHSK AFEEVAEALD YSLKELGYPT ALSVNRVTDD TVNIIFGAHL
LPLQDLHSLH PSTIIVNAEP LSATSERTRE RVLICLNAGL EIWDYSPANI EILNRIGGRP
VKYLQLGFQK ELDRIAPAPV RDIDVLFYGS MNERRAEILY GLQARGLVIE HLFDVYGRER
DAWIARSKVV LNMHLLESQI FEVVRVFYLL INGVAVVGEV NGPETLIDER FAQGIVAAPY
GDLIDVTEQL VRDAARLEKQ RILARDAIKR HPQVTFTQQL L
|
|---|
| |