| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1646 |
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| Symbol | vgrG |
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| ID | 7386665 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 1376696 |
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| End bp | 1379098 |
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| Gene Length | 2403 bp |
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| Protein Length | 800 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643650981 |
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| Product | vgrG protein |
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| Protein accession | YP_002549186 |
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| Protein GI | 222148229 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACGACG TTCTGTCGCC GACCGATTTC ATCCAGGCTA GCCGTGTGCT GAAACTATCG
TCGCCGTTGG GCGAGGATCA GTTGCTTCCA GAGCGGATGA TGGTGGACGA GGGCGTCAAT
CGCCTGTTCG AGATCACGCT TTCAGTGCGC GCCAAGCGCG AGGCGGTCAA GCCCGAAGAG
CTGATCGGCA AGCTGGTCGA TGTGTCCCTG GAAATCCGCC AGGGCGAACT GGATGGGGAT
GGTGTGCGCC GGCCGTTTAA TGGACTGGTG ACCAATCTGT CCGAGGGACC GCCGGTGACG
CGCGGATTGC GGTCCTATAC CCTGACCATC CGCCCCCAAC TGTGGCTGTT GTCACGCCGC
TCCGATTGCC GGATCTGGCA GAACATGACG GCAATCCAGG TGATGGAAAC GCTGTTTTCC
GAGCATGGTA TTCCGGCACC CGCATATGCC CCTCTGCACA AGACACCGCC GTCGCGGGAA
TATTCAACAC AATGGAACGA GACCGATCTT GACTATCTGC TGCGCCGTTT CGAGCAAGAA
GGATTGTTCT TCTGGTTCGA ACATGAGACC GGCGTTCATC GCCTGAAGGT CAGCGACAGC
AAGGTGGCCT GGGGCTCACC ATCTGCATCG GCAGAAGGCG AGCAGAATGT GCGTCTTGCG
CAAGGCTCCT CGGATCGCAA CCACATCAAC GAATGGATGC GGCAGTTTTC CTACATCCCC
GGCCAGCGCG CCGGTGCGGA TTGGAATTTC GAGACGCCCA GCACTGTGCC GCTGAATGTC
ACGCCGTCGC TGATCCAGAT GCCAGGGGCC AAACAGCGCG AGCTGTACGA ATATCCGACC
CGCATCTCTG ATGTCAAAGA GGCCGAGGTG GCCGAGACGT TCCGTATGCA GGCCGTGGAG
GCCGATCATG AGCGGGTGAC GGGCCAGTCC AATGTGCGCT TCCTGGAAGC CGGACGGCGG
TTCACACCAT ATGAGGAACC GCATCCAGAG CATAAATACG AAGAGCATGT GATTACCCGG
ATTACCCATT GGGTCGTTGA CCGCTCCTAT GAGACAACTG AGAATGAGCC GGAATATCGC
AATGCATTCG AGGCAATCCC GTCGCGAGTT CCGCTGACGC CGCACCGCGA GACCAAGCGC
CCGCGCATCG AGGGGACACA GGTGGCGATT GTCGCCGGAC CATCGGGCGA GGAGATCCAC
ACGGATCAAT ACGGGCGATT AAAATTATGG TTCCCCTGGG ATAGAAAAGC ACAGAAGGAC
GGCAGTGATA CCTGCTGGGT GCGCGTCGCC CAGGCCTGGG GTGGTGGCAC CTGGGGCGCT
CAGGTCATTC CGCGCATCGG CATGGAAGTG ATGGTGTCCT TCGTGGATGG CGATCCGGAC
CGGCCACTGG TTATTGGCGT GGTGCCGAAC CCGAAAAACC CGGTGCCTTA TGAACTGCCC
GCCAACAAGA CCCGCATGGT GCTTCGGTCA AATACCCACA AGGGCAGCGG CTTCAACGAA
ATGACCTTCG AGGATGAGAG TGGCAAGGAG AATATGTTCT TCCACGCCCA GAAGGATCAG
ACAACGCGAG TGCTGAACGA CCGCACCAAG CGCATCGACC GCCATGAGGT GGCCTCCATT
GGCGGCAACC GGGCGGTGGA AGTTTCGGGC AATCAGAAGC ACGAGATCGG CGGCTCGGTA
AACACGGTGG TCGGCGGCAC GGGGCCGATG GCGATGCTGG CCATGGCAGG CGTTCAGGCA
CTGTCCGGCC AGACGGCGGG GTTGCTGTCG CAAGCGGGTC AGATAGCGGG TGGTGGCGGA
CCGGGTCTTG CCAACTTTGC CACCACCCTT GCATCCTCAG CACTCGGATT CCTTGGTGCT
GGCGGAATGA TGGCTCGCGA AGGCGTTGTC GCTGGTTCCA GCCCAAGGGC CGACGCAGGC
ACGGCGCTGG CTGGTTCCGG CACGGGTGTC GGCACGGACG CCTCAGGCCT GTTCCCGATG
CCCGGCATTA TGAATACCAT CGTCAGCAGC TTCAAATCCG ACAGCGTCGG GATTGCTAGA
GCCGAGCAGA TCGGTGTCAG TAAGGTGACG AATGTCGGGC AGACCTATGT GACAAATGTC
GGCAAGGAGC AGCGCACCAC TGTCGGCAAG ACGATCAATG TTGAGGTTGG AAAGCTCTAC
AACGTCGTTT CCGGCGAAAA ATATCACGGG GAAGCCAAGG TCTGGGAGAT CTATGCGAAC
GATACCATCC TGCTTTCCAC TAAGGGTGGC TACATCGAGC TGAATAACAG CGGCATCCGT
ATTCACGGCC TGAAGATCGA CATCGAGGGC AACCAGATCA ACTTCAAGAA GGGCGGGCCT
GGAGAAGGTG CGTCATGTCT CAGGAACATG TCCCAATCCT CAACGCCTTT CGTGAGGGGG
TAA
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| Protein sequence | MDDVLSPTDF IQASRVLKLS SPLGEDQLLP ERMMVDEGVN RLFEITLSVR AKREAVKPEE
LIGKLVDVSL EIRQGELDGD GVRRPFNGLV TNLSEGPPVT RGLRSYTLTI RPQLWLLSRR
SDCRIWQNMT AIQVMETLFS EHGIPAPAYA PLHKTPPSRE YSTQWNETDL DYLLRRFEQE
GLFFWFEHET GVHRLKVSDS KVAWGSPSAS AEGEQNVRLA QGSSDRNHIN EWMRQFSYIP
GQRAGADWNF ETPSTVPLNV TPSLIQMPGA KQRELYEYPT RISDVKEAEV AETFRMQAVE
ADHERVTGQS NVRFLEAGRR FTPYEEPHPE HKYEEHVITR ITHWVVDRSY ETTENEPEYR
NAFEAIPSRV PLTPHRETKR PRIEGTQVAI VAGPSGEEIH TDQYGRLKLW FPWDRKAQKD
GSDTCWVRVA QAWGGGTWGA QVIPRIGMEV MVSFVDGDPD RPLVIGVVPN PKNPVPYELP
ANKTRMVLRS NTHKGSGFNE MTFEDESGKE NMFFHAQKDQ TTRVLNDRTK RIDRHEVASI
GGNRAVEVSG NQKHEIGGSV NTVVGGTGPM AMLAMAGVQA LSGQTAGLLS QAGQIAGGGG
PGLANFATTL ASSALGFLGA GGMMAREGVV AGSSPRADAG TALAGSGTGV GTDASGLFPM
PGIMNTIVSS FKSDSVGIAR AEQIGVSKVT NVGQTYVTNV GKEQRTTVGK TINVEVGKLY
NVVSGEKYHG EAKVWEIYAN DTILLSTKGG YIELNNSGIR IHGLKIDIEG NQINFKKGGP
GEGASCLRNM SQSSTPFVRG
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