Gene Avi_1618 details

Gene Information

• Locus tag: Avi_1618
• Symbol: ribH
• ID: 7387411
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 1354990
• End bp: 1355448
• Gene Length: 459 bp
• Protein Length: 152 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 643650960
• Product: 6,7-dimethyl-8-ribityllumazine synthase
• Protein accession: YP_002549165
• Protein GI: 222148208
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0054] Riboflavin synthase beta-chain
• TIGRFAM ID: [TIGR00114] 6,7-dimethyl-8-ribityllumazine synthase

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTGACC AATATTCCGC ACCGCACCTT CTTATTGTCG AGGCCCGATT CTACGACGAC 
ATGGCCGATG CGCTGCTGGA CGGCGCCAAG GCGGTGCTGG ATGAGGCAGG CGCCAGCTAT 
GACATCGTTA CCGTCATGGG CGCGCTCGAA GTCCCCGCGG CCATTTCGAT GGCGCTCGAC 
GGCGCCGACA ATGGCGGCGT GGTCTATGAC GGCTATGTGG CTCTCGGCAT GGTTATCAGG 
GGTGAGACCT ATCACTTCGA TATCGTCGCC AACGAATCCT CCCGCGCCCT TATGGATCTT 
TCCGTGTCCG AATCGCTTGC CATCGGCAAC GGCATCCTGA CGGTAGAGAA TGATGAACAG 
GCCTGGGCCC GCGTCAAGCG GACGGACAAG GACAAGGGTG GCTTTGCCGC TCGCGCCGCC 
CTGACGATGA TTGCCTTGAA GCAGAAATTT GGTGGCTGA 

 

Protein sequence

MSDQYSAPHL LIVEARFYDD MADALLDGAK AVLDEAGASY DIVTVMGALE VPAAISMALD 
GADNGGVVYD GYVALGMVIR GETYHFDIVA NESSRALMDL SVSESLAIGN GILTVENDEQ 
AWARVKRTDK DKGGFAARAA LTMIALKQKF GG