Gene Avi_1613 details

Gene Information

• Locus tag: Avi_1613
• Symbol: ribD
• ID: 7387408
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 1352309
• End bp: 1353409
• Gene Length: 1101 bp
• Protein Length: 366 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 643650957
• Product: bifunctional riboflavin deaminase-reductase
• Protein accession: YP_002549162
• Protein GI: 222148205
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0117] Pyrimidine deaminase; [COG1985] Pyrimidine reductase, riboflavin biosynthesis
• TIGRFAM ID: [TIGR00227] riboflavin-specific deaminase C-terminal domain; [TIGR00326] riboflavin biosynthesis protein RibD

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGTGTGCG AACAGCCTGA TGATCAGCGG TTCATGGCAG CGGCGATTAG GCTCGGTCGC 
AGTCATCTGG GGCAAACCCT GACCAACCCG TCGGTCGGTT GCGTGATCGT TGCCGACGGA 
ACCATTGTCG GCTCCGCTGT CACAGCGATT GGCGGACGCC CGCATGCCGA GCGTCAGGCC 
ATTGCCGTGG CCGGCGAAAA GGCCCGCGGC GCTACGGCCT ATGTGACGCT TGAACCCTGT 
TCCCATCATG GCAAGACCCC GCCTTGTGCT GACGCGCTGG TTGAGGCTGG CGTGGCGCGG 
GTTGTGGTTG CCGTCACCGA CCCGGACCCG CGGGTTTCAG GCCGTGGCCT GTCCATCCTG 
ACGGATGCGG GGATCGAGGT GGTAACCGGC GTGCTGGAGC GTGAAGCGCG CTATGGGCTC 
GCTGCCTATC TGACCCGCCA GACGAAACAG CGTCCGCATG TGACCCTGAA ACTGGCTCTG 
TCGCGGGATG GTATGATTGG CCGGGCGGGC GAGGGGCAGG TGGCGATTAC CGGGCCGCTG 
GCTCGTACCC AGGTGCAATT GTTGCGGGCC GAAAGCGATG CCATTCTGGT CGGGATCGGC 
ACGGCAAAGG CTGATGATCC AGATCTGACG GTGCGGCTGG CTGGACAAAC CCATCTTTCG 
CCGCTGCGCA TCGTGCTCGA CCGGCGGCTG GAACTGCCCA TTGGTTCGAA ACTGGTGCAA 
ACGGCGGGGC ACGTGCCGAC GGTTTGCGCG TGTGGTGAGC CTTCCACCTT TACCTGCACG 
GAAAGTTTCG AGGCGAGCCG CACGGCATTG CAGGCTGCGG GCGTTGATGT CTGGCCGGTG 
GCCGATCTTG ACGATCTGCT GCGCCAACTG GCTGTGCAGG GCATGTCTTC CCTGCTGGTG 
GAAGGGGGGG CCGCTGCGGC AAAGGCCTTC CTGAACGCGG GCTTGGTGGA TCGCATCCAT 
CTTTACCAGG GACCAGATGA AATCGGCGGT AGTGGACTTG CATCGCCGCT CACGCCTGCC 
AATATACCGG AGAATTTTCG TCATCTGCGC AGTGTAAACT TCGGCGCGGA TCGTTTCGAT 
GAATATGAGC AGGATTTCTG A 

 

Protein sequence

MVCEQPDDQR FMAAAIRLGR SHLGQTLTNP SVGCVIVADG TIVGSAVTAI GGRPHAERQA 
IAVAGEKARG ATAYVTLEPC SHHGKTPPCA DALVEAGVAR VVVAVTDPDP RVSGRGLSIL 
TDAGIEVVTG VLEREARYGL AAYLTRQTKQ RPHVTLKLAL SRDGMIGRAG EGQVAITGPL 
ARTQVQLLRA ESDAILVGIG TAKADDPDLT VRLAGQTHLS PLRIVLDRRL ELPIGSKLVQ 
TAGHVPTVCA CGEPSTFTCT ESFEASRTAL QAAGVDVWPV ADLDDLLRQL AVQGMSSLLV 
EGGAAAAKAF LNAGLVDRIH LYQGPDEIGG SGLASPLTPA NIPENFRHLR SVNFGADRFD 
EYEQDF