Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_1600 |
Symbol | |
ID | 7387399 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 1342748 |
End bp | 1344532 |
Gene Length | 1785 bp |
Protein Length | 594 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 643650948 |
Product | GGDEF family protein |
Protein accession | YP_002549153 |
Protein GI | 222148196 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2200] FOG: EAL domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.723611 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCGTGG ACCAAGAGCG CGAACTGGCA AGACTGACCA GCCTACGCAA CCTGAAAATA CTTGATACCC TACCGAGTGA AAGCTTCGAC CGGATTACTC GAATCGTATC GGAATTTTTC GGACTGCCAG TCGCGGCCGT GTCGCTGACA GATGTCGATC GCCAGTGGTT CAAGTCGAAA GTGGGAATCG AGCATAACCA GATTCCACGA TTCAAGGCGC CCTGTGCTGA AGTCGCGGAG ACTTGTCGGC CGCTGATCGT CAACGATTTT CACAATGATG CCTTTTATGT CGATAGTCCC CTCGGTCAGG CTGGCGTGCG GTTCTACGCC GGTGTGCCGC TGATGACGAC GGATGGCTAT TCCCTGGGCG CGCTCTGCGT TCTTGATAAT GAACCTCACA CGGTCGGCGA CAGGGAAATG GCCGTACTCT CCGATATGGC GGCCATGGTC ATGGCGCAGA TAGAAATGCA GCATGCCGTT GGCCGTATTG AGGCCGCCAG CGGTCTGCCC AATCGCTTCC AATTGTTGAG CGACCTTGCC GATATTGGCA AGCACGGCGG GGGCAAGGAA CGGTTGATCG GCGTTCTCGA TCTTGCGCGC ACCATGCAGT TCGACCGGTT GTCGCGTGTC ATGGGTCCAT CGCATCTGGA TGGTGTCATC CGCTCCGTGG CGCAGTTCCT GCAGAGGGCG GTAGGTGATC ATACCGCCTC CTATCACATT GGCGCGATGC AGTTTGCCTT GATCCCGCCG GAGGACGTCA CATCCGAAAG CCTGCTTCCT ATGCTGAAAA GCTTGCTGTC CGATGTCGGT GAGGTGGCCA ATCTTCGTTT GACGATGACA CCCTCGCTTG GGGTGACCTG GTTCAATCCG GGCGCAATGG AGCCGGAAAA CGTGCTGCGG TCGCTGCAAA GTGCGGTTCA AGACGCGCGT GACAGCGAAA CCGGCATTGC CTTTTTCTCC GACGATCATG ACCTGCTGCA TCGCCGTAAC TTCCGCCTGT TGCAGGATTT TCCTGTCGCT CTGGCGTCGC AGGATCAATT GCATCTGGTT TTCCAGCCGA GGCTGTCTTT GAAGACCGGT CAGGCGGAAT GCGCCGAAGC GTTGCTGCGC TGGAACCACC CTGAACTGGG GTCGATTTCA CCAGCCGAAT TCGTGCCAGT TATCGAAGCC TCCGATCTGG TGCGCGCCAT GAGCGCCTGG GTGATCGACA AGGCGCTGTC GCATCTGGCC GTTCTGCGAG GTCAAGGCAT CGATATGCGA TTGTCGATCA ATATTTCGGC TCTCAATCTG AATGAGCCGG AATTTCTGGA ACTGCTGAAG GAAAAGCTGG CGAAATACGA TGTTCTGCCG GGTCAGATTG AATTTGAACT GACGGAAACG GCGATGATGA GGGAGACCGA AAAGTCACTC GACCTTCTTC ACGCGCTGAG CGCCCATGGT ATCCGGCTGG CGATCGACGA CTTCGGCACT GGCTATAGCA GCCTGGCCTA TATGCAGAAA TTGCCTGCTG ATGTTGTGAA AATCGACCGT TCTTTCGTCG CGGATATGGC AAAAGGCAAT CGCGAGCGCG TCTTGGTGCG ATCGATGATC AACCTTTCGC ACAGTCTAGG CTATGAAGTG GTGGCGGAAG GCGTCGAAAC GCTGGAAGCT GCTGATCTCC TGCAAGCGAT GGGTTGCGAT GAGATTCAGG GCTTCTGGCT GTCGCGTCCC ATGGCGGCGG AAGTCCTGCC GGAATGGCTG CGCCATCGGC ATGGGGCTGC TGATCAGGCG GCTCAGGTCG CCTGA
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Protein sequence | MTVDQERELA RLTSLRNLKI LDTLPSESFD RITRIVSEFF GLPVAAVSLT DVDRQWFKSK VGIEHNQIPR FKAPCAEVAE TCRPLIVNDF HNDAFYVDSP LGQAGVRFYA GVPLMTTDGY SLGALCVLDN EPHTVGDREM AVLSDMAAMV MAQIEMQHAV GRIEAASGLP NRFQLLSDLA DIGKHGGGKE RLIGVLDLAR TMQFDRLSRV MGPSHLDGVI RSVAQFLQRA VGDHTASYHI GAMQFALIPP EDVTSESLLP MLKSLLSDVG EVANLRLTMT PSLGVTWFNP GAMEPENVLR SLQSAVQDAR DSETGIAFFS DDHDLLHRRN FRLLQDFPVA LASQDQLHLV FQPRLSLKTG QAECAEALLR WNHPELGSIS PAEFVPVIEA SDLVRAMSAW VIDKALSHLA VLRGQGIDMR LSINISALNL NEPEFLELLK EKLAKYDVLP GQIEFELTET AMMRETEKSL DLLHALSAHG IRLAIDDFGT GYSSLAYMQK LPADVVKIDR SFVADMAKGN RERVLVRSMI NLSHSLGYEV VAEGVETLEA ADLLQAMGCD EIQGFWLSRP MAAEVLPEWL RHRHGAADQA AQVA
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