Gene Avi_1600 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_1600 
Symbol 
ID7387399 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp1342748 
End bp1344532 
Gene Length1785 bp 
Protein Length594 aa 
Translation table11 
GC content57% 
IMG OID643650948 
ProductGGDEF family protein 
Protein accessionYP_002549153 
Protein GI222148196 
COG category[T] Signal transduction mechanisms 
COG ID[COG2200] FOG: EAL domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.723611 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCGTGG ACCAAGAGCG CGAACTGGCA AGACTGACCA GCCTACGCAA CCTGAAAATA 
CTTGATACCC TACCGAGTGA AAGCTTCGAC CGGATTACTC GAATCGTATC GGAATTTTTC
GGACTGCCAG TCGCGGCCGT GTCGCTGACA GATGTCGATC GCCAGTGGTT CAAGTCGAAA
GTGGGAATCG AGCATAACCA GATTCCACGA TTCAAGGCGC CCTGTGCTGA AGTCGCGGAG
ACTTGTCGGC CGCTGATCGT CAACGATTTT CACAATGATG CCTTTTATGT CGATAGTCCC
CTCGGTCAGG CTGGCGTGCG GTTCTACGCC GGTGTGCCGC TGATGACGAC GGATGGCTAT
TCCCTGGGCG CGCTCTGCGT TCTTGATAAT GAACCTCACA CGGTCGGCGA CAGGGAAATG
GCCGTACTCT CCGATATGGC GGCCATGGTC ATGGCGCAGA TAGAAATGCA GCATGCCGTT
GGCCGTATTG AGGCCGCCAG CGGTCTGCCC AATCGCTTCC AATTGTTGAG CGACCTTGCC
GATATTGGCA AGCACGGCGG GGGCAAGGAA CGGTTGATCG GCGTTCTCGA TCTTGCGCGC
ACCATGCAGT TCGACCGGTT GTCGCGTGTC ATGGGTCCAT CGCATCTGGA TGGTGTCATC
CGCTCCGTGG CGCAGTTCCT GCAGAGGGCG GTAGGTGATC ATACCGCCTC CTATCACATT
GGCGCGATGC AGTTTGCCTT GATCCCGCCG GAGGACGTCA CATCCGAAAG CCTGCTTCCT
ATGCTGAAAA GCTTGCTGTC CGATGTCGGT GAGGTGGCCA ATCTTCGTTT GACGATGACA
CCCTCGCTTG GGGTGACCTG GTTCAATCCG GGCGCAATGG AGCCGGAAAA CGTGCTGCGG
TCGCTGCAAA GTGCGGTTCA AGACGCGCGT GACAGCGAAA CCGGCATTGC CTTTTTCTCC
GACGATCATG ACCTGCTGCA TCGCCGTAAC TTCCGCCTGT TGCAGGATTT TCCTGTCGCT
CTGGCGTCGC AGGATCAATT GCATCTGGTT TTCCAGCCGA GGCTGTCTTT GAAGACCGGT
CAGGCGGAAT GCGCCGAAGC GTTGCTGCGC TGGAACCACC CTGAACTGGG GTCGATTTCA
CCAGCCGAAT TCGTGCCAGT TATCGAAGCC TCCGATCTGG TGCGCGCCAT GAGCGCCTGG
GTGATCGACA AGGCGCTGTC GCATCTGGCC GTTCTGCGAG GTCAAGGCAT CGATATGCGA
TTGTCGATCA ATATTTCGGC TCTCAATCTG AATGAGCCGG AATTTCTGGA ACTGCTGAAG
GAAAAGCTGG CGAAATACGA TGTTCTGCCG GGTCAGATTG AATTTGAACT GACGGAAACG
GCGATGATGA GGGAGACCGA AAAGTCACTC GACCTTCTTC ACGCGCTGAG CGCCCATGGT
ATCCGGCTGG CGATCGACGA CTTCGGCACT GGCTATAGCA GCCTGGCCTA TATGCAGAAA
TTGCCTGCTG ATGTTGTGAA AATCGACCGT TCTTTCGTCG CGGATATGGC AAAAGGCAAT
CGCGAGCGCG TCTTGGTGCG ATCGATGATC AACCTTTCGC ACAGTCTAGG CTATGAAGTG
GTGGCGGAAG GCGTCGAAAC GCTGGAAGCT GCTGATCTCC TGCAAGCGAT GGGTTGCGAT
GAGATTCAGG GCTTCTGGCT GTCGCGTCCC ATGGCGGCGG AAGTCCTGCC GGAATGGCTG
CGCCATCGGC ATGGGGCTGC TGATCAGGCG GCTCAGGTCG CCTGA
 
Protein sequence
MTVDQERELA RLTSLRNLKI LDTLPSESFD RITRIVSEFF GLPVAAVSLT DVDRQWFKSK 
VGIEHNQIPR FKAPCAEVAE TCRPLIVNDF HNDAFYVDSP LGQAGVRFYA GVPLMTTDGY
SLGALCVLDN EPHTVGDREM AVLSDMAAMV MAQIEMQHAV GRIEAASGLP NRFQLLSDLA
DIGKHGGGKE RLIGVLDLAR TMQFDRLSRV MGPSHLDGVI RSVAQFLQRA VGDHTASYHI
GAMQFALIPP EDVTSESLLP MLKSLLSDVG EVANLRLTMT PSLGVTWFNP GAMEPENVLR
SLQSAVQDAR DSETGIAFFS DDHDLLHRRN FRLLQDFPVA LASQDQLHLV FQPRLSLKTG
QAECAEALLR WNHPELGSIS PAEFVPVIEA SDLVRAMSAW VIDKALSHLA VLRGQGIDMR
LSINISALNL NEPEFLELLK EKLAKYDVLP GQIEFELTET AMMRETEKSL DLLHALSAHG
IRLAIDDFGT GYSSLAYMQK LPADVVKIDR SFVADMAKGN RERVLVRSMI NLSHSLGYEV
VAEGVETLEA ADLLQAMGCD EIQGFWLSRP MAAEVLPEWL RHRHGAADQA AQVA