| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1597 |
|---|
| Symbol | |
|---|
| ID | 7387397 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 1338897 |
|---|
| End bp | 1340921 |
|---|
| Gene Length | 2025 bp |
|---|
| Protein Length | 674 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 643650946 |
|---|
| Product | GGDEF family protein |
|---|
| Protein accession | YP_002549151 |
|---|
| Protein GI | 222148194 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0570489 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAATA CCCTGCCCGA TCCGAATACC GTGACTAGGA GCGGGGTTTC CGATAGAAGG
CGAACCGCAG AAATGGCGAA GCTCTACCGG GAAGAGACTG AGCAGGATAG GATCCATAAA
GCCAGATTTG GACTTTGGGC AGCCAGCATT GTCTATATCC TATTCTCCAT AACCGATTTC
CTACTCGTTC CGGATGTTGC CGTAACGGAA ATGAAAATCC GGCTGCTCAT CGGCGTGCTC
GCCATTGTCT CTCTGGAAAC GCAGATTTGG CTGAAGGTCA GGGCCGCGTG GATAGACCTG
ACATGCTCCA TTGCCCTCAT TATCGGCTAT GGAGTCTGGC TGTATGTGGC CTCAATGACT
GAATTGTCTG AGAACCTGCG TTACTACATG GTTTTTGGGA CTATTTTCAT GATGAGCGCC
AACCTTTTCT TTGGCCTGGA CTTTCTGCTA TCCATCGCGA CATCGGCTGT GGTTCTCCTG
CTGTTTTTCT GGAGCCTTAC AACCAATTTC GCGGAAGAAA CCTCCTATGT TATTGCTTTT
GGGACGTTTT TTGTCTCCTG TTTCATTTTC ACCAGCTACG TCAATCTACG GCTGAACAGG
GAGCGACATA ATGTTTTCCT CAACGCGCTG GAGGCACGCA AGCAGCATCG GGAAGCGATC
GAACGCGGCA AAGCGCTGCT GCGCCTTTCC AACACAGACT ATCTGACCGG CGTTGAAAAC
CGGCGTGCCA TCGATCAGCG ATTGCGGGAC AATTGGGCTG AATGGCAAAG TTCAGGAACC
GGCTTTGCCG CAATTTTGGT CGACGTCGAT TTTTTCAAGA AATACAACGA CTATTACGGC
CATCAGGCTG GCGACCACTG TCTGGTCCTG GTCGCCAATG CTCTGAAGAC AGCCCTCCTG
CCCTTCAATG CCTCCATTGG CCGTTATGGC GGCGAGGAAT TTATCGTTCT GGCTCCAGCC
GCTAGCCGTG ACGATGTTGG GCTGCTGGCT GAGATGATTC GCAATACCGT GGAAAAAATG
TCGCTGGTCC ATGATCAGCG CAAGGATGGC ATCAACGTCG TTACGGTCAG CGTCGGCGCG
GCCTTCACAC GCCCTCATTT CGGTCCACGG CTGGAAAAGA TCATTACCGA GGCGGACCGG
GCGCTCTATT CGGCAAAGGC CAATGGTCGT AATTGCGTGC GGCTGTTTGA CCCGAACGAT
CCGCAAAGCA GCGACGATAG CGAACACATT GCCGCTTTGT TGCGGGTGGC TGTGGCCAAT
AACCTTGTTT CCCTCGTCTA TCAGCCGATC CTCAACCTCA CGACCGGCAA GATCGACGCT
GCTGAAGCCC TGATGCGGCT GAAACTGCTG GATGGGACGC CTGTCACACC CTCGGTGTTC
ATTCCGATTG CCGAGCGAAC GGGGTCCATC CTTGATCTCG GCCTGTGGAC GCTACGCCAG
GCCTGCACCG AAATCCTCGT TCCCGGCCAC GCGCCGGTCG TTAGTATCAA TGTCTCTCCT
ATTCAGTTGA AAACCCGCGG CTTTGCCGCC GCCGTGGCTG AAATCCTGAT CGATACCGGC
GTTGATGGGC AGCATGTCGC CTTCGAGATT ACCGAAGGCA TCAATATGGA TCGTCAATCC
GACATACTGC GCTGCATCAA GGACCTTGAA AATATGGGCA TCCGCATCTG GCTGGATGAT
TTCGGCACCG GTTTCGCCGG ACTGTCCTGG CTACGGCTCT TCAATTTCGA CACCGTGAAG
ATCGACAGGT CCTTCCTTCA TGACAGCGAT ACGCCGAAGG GACGCTCCAT GCTGCGCGAC
ATCATCGCGC TGGTCCGCAA TCGTGGCCAC CGCATTCTTG TCGAGGGCAT CGAGACCGAG
GAACAGCTGG AGTTGATGCG GCAGTTCGAC ATTGATCATG TACAGGGATT CTACATCGGC
CGCCCGGCCA CCCTGGATGT CTTCAAGTCC AAACCCCTGA ACCATTTTAG CCAAACTGAG
GCGGAAAGCA CAGACGCGCC GCTGATTACC CATTTTATCA GCTAG
|
|---|
| Protein sequence | MKNTLPDPNT VTRSGVSDRR RTAEMAKLYR EETEQDRIHK ARFGLWAASI VYILFSITDF
LLVPDVAVTE MKIRLLIGVL AIVSLETQIW LKVRAAWIDL TCSIALIIGY GVWLYVASMT
ELSENLRYYM VFGTIFMMSA NLFFGLDFLL SIATSAVVLL LFFWSLTTNF AEETSYVIAF
GTFFVSCFIF TSYVNLRLNR ERHNVFLNAL EARKQHREAI ERGKALLRLS NTDYLTGVEN
RRAIDQRLRD NWAEWQSSGT GFAAILVDVD FFKKYNDYYG HQAGDHCLVL VANALKTALL
PFNASIGRYG GEEFIVLAPA ASRDDVGLLA EMIRNTVEKM SLVHDQRKDG INVVTVSVGA
AFTRPHFGPR LEKIITEADR ALYSAKANGR NCVRLFDPND PQSSDDSEHI AALLRVAVAN
NLVSLVYQPI LNLTTGKIDA AEALMRLKLL DGTPVTPSVF IPIAERTGSI LDLGLWTLRQ
ACTEILVPGH APVVSINVSP IQLKTRGFAA AVAEILIDTG VDGQHVAFEI TEGINMDRQS
DILRCIKDLE NMGIRIWLDD FGTGFAGLSW LRLFNFDTVK IDRSFLHDSD TPKGRSMLRD
IIALVRNRGH RILVEGIETE EQLELMRQFD IDHVQGFYIG RPATLDVFKS KPLNHFSQTE
AESTDAPLIT HFIS
|
|---|
| |