| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1588 |
|---|
| Symbol | rnd |
|---|
| ID | 7387390 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 1328221 |
|---|
| End bp | 1329375 |
|---|
| Gene Length | 1155 bp |
|---|
| Protein Length | 384 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643650939 |
|---|
| Product | ribonuclease D |
|---|
| Protein accession | YP_002549144 |
|---|
| Protein GI | 222148187 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0349] Ribonuclease D |
|---|
| TIGRFAM ID | [TIGR01388] ribonuclease D |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTTCTA CAACTCAAGA TTTAGAAGCC GCTTGCGAAA AACTGGCCAA ATCTGAATTT
ATCACCATTG ATACGGAATT CCTGCGTGAA ACCACTTTCT GGCCGGAGCT GTGCCTGATC
CAGATGGCCA GTCCCGATCT AGAGGTCATT GTCGATCCGC TGGCCGAGGG GCTCGATCTT
GCACCCTTTT TCAAGTTGAT GGCCAATGGC GATGTGATCA AGGTGTTTCA CGCCGCGCGC
CAGGATATTG AAATCATTTT TCACCTGGGC AATCTCATTC CCCATCCAAT CTTCGACACC
CAGGTGGCGG CCATGGTCTG CGGCTTTGGC GACAGCGTGT CCTATGACCA GCTGGTCCAG
AAGATCAAGA ATATCCATAT CGATAAAAGC TCGCGCTTTA CCGACTGGAG CCGCCGTCCG
CTTTCGGAAA AGCAGCTGGA TTACGCGCTC GCCGATGTCA CCCATCTGCG CGATGTCTAC
CTGACTCTGA ACGCAGAACT GGAGCGTGAA GGCCGCGCCA GCTGGCTGAG CGAGGAAATG
GCCATCCTCG AATCCCGCGA CACCTATGAT CTACACCCGG ACGATGCCTG GCAACGGCTG
AAGATGCGGC TGAGAAAACC GCAGGAGCTG ATGGTGATGA AGGCCGTGAC CGCCTGGCGC
GAGCGTGAGG CCCGCGCCCG CAACGTCCCC CGCTCACGGG TGATCAAGGA CGACGCTATT
TTCGAAATCG CCCAGCAGCA GCCCAGGGAT GTCGAGGCGC TCGGACGGCT CCGGACCATT
CCGAAGGGCT GGGAGCGCTC GGCACCGGGC GGCGCGATCA TCGACGCGGT CAATGCCGCC
CTGGCAATTC CCAAGGCCGA ATGGCCGCAG GTCCAACGCC AGAACCATGT GCCGGAAGGC
ACGGCACCGG CTGTGGAACT GCTCAAGGTA CTGCTGCGCC TGACCTGCGA ACAGCATGGC
GTCGCCGCCA AGATGATCGC CAATACCGAC GACCTGGAAA AGATTGCCGT CGAGGGCGAA
CAGGCCGATG TGCAGGCCAT GCGCGGCTGG CGGCGTGATC TGTTCGGCGA ATCGGCGCTG
AAGCTGATCA ATGGCGGGGT TGCCCTCCGC TTCGTCGGCA AGAAGATCGA AGCCGTCGAA
TTTATCGAAC CTTGA
|
|---|
| Protein sequence | MISTTQDLEA ACEKLAKSEF ITIDTEFLRE TTFWPELCLI QMASPDLEVI VDPLAEGLDL
APFFKLMANG DVIKVFHAAR QDIEIIFHLG NLIPHPIFDT QVAAMVCGFG DSVSYDQLVQ
KIKNIHIDKS SRFTDWSRRP LSEKQLDYAL ADVTHLRDVY LTLNAELERE GRASWLSEEM
AILESRDTYD LHPDDAWQRL KMRLRKPQEL MVMKAVTAWR EREARARNVP RSRVIKDDAI
FEIAQQQPRD VEALGRLRTI PKGWERSAPG GAIIDAVNAA LAIPKAEWPQ VQRQNHVPEG
TAPAVELLKV LLRLTCEQHG VAAKMIANTD DLEKIAVEGE QADVQAMRGW RRDLFGESAL
KLINGGVALR FVGKKIEAVE FIEP
|
|---|
| |