Gene Avi_1550 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_1550 
SymbolligE 
ID7387362 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand+ 
Start bp1301170 
End bp1301850 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content58% 
IMG OID643650911 
Productlignin degradation protein 
Protein accessionYP_002549116 
Protein GI222148159 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0625] Glutathione S-transferase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones6 
Plasmid unclonability p-value0.355245 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCCGAC TTCTCTACTC ACTTGCAGGA ACAGACCTCA CTCGTCCGTT TTCACCGCAT 
TGCTGGAAGA TCATCCTGGC GCTGCGCCAC AAGGGGTTGA GCTTTGAGGA AAAGCCGCTG 
GCCTTTACCG AAATTCCAAC AGTGGAGGAG GGGATATCGA AACTGGTGCC GATCCTGCGC 
GATGGCGATA CCGTGGTCGC GGACAGTTTC CAGATCGCGC TTTATCTGGA AGAGGCCTAT 
CCGGACCGTC CCAGCCTGTT TCGCGGCGAG GGCGGCAAGG CTCTGGCACG GTTTGTGGAA 
GGCTATTCGC AATCCACCAT CCATCCGGCC ATCAGTTCCA TCGCCCTTAT GGATATCTAC 
AACATGATCT CTCCCGCCGA TCAGGCGCAT TTTCGCAAAA CCCGCGAAGC GCTGTTCGGC 
AAGGTGCTGG AAGAGATTTT CCCGGATCGC GACGGTGCAA TTGCGGCGTT TCCGGCGAAA 
CTCCAGCCCT TGCGACATAT GCTGCGGTCG CAGCCCTTTA TCGGCGGGGA AAAGCCGTTG 
TTTGCCGATT ACATCGTGTT TGGCGCATTC CAGTGGTTGA AGATCGTCAC AGGCTCGATC 
TTCTTGCCCG AAGACGATCC GGCAGCGCAA TGGTTCGAGC GCTGCGCGGC CCTTGGCTTG 
GTGCAGGCTG ACGCGGCATA A
 
Protein sequence
MTRLLYSLAG TDLTRPFSPH CWKIILALRH KGLSFEEKPL AFTEIPTVEE GISKLVPILR 
DGDTVVADSF QIALYLEEAY PDRPSLFRGE GGKALARFVE GYSQSTIHPA ISSIALMDIY 
NMISPADQAH FRKTREALFG KVLEEIFPDR DGAIAAFPAK LQPLRHMLRS QPFIGGEKPL 
FADYIVFGAF QWLKIVTGSI FLPEDDPAAQ WFERCAALGL VQADAA