| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1538 |
|---|
| Symbol | pdxA |
|---|
| ID | 7386493 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 1286049 |
|---|
| End bp | 1287089 |
|---|
| Gene Length | 1041 bp |
|---|
| Protein Length | 346 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 643650901 |
|---|
| Product | 4-hydroxythreonine-4-phosphate dehydrogenase |
|---|
| Protein accession | YP_002549106 |
|---|
| Protein GI | 222148149 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1995] Pyridoxal phosphate biosynthesis protein |
|---|
| TIGRFAM ID | [TIGR00557] 4-hydroxythreonine-4-phosphate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.321574 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGGATA CCAGCCAGCG TCTTCCCCTC GCCTTGACCC AAGGCGATCC AGCGGGGATC
GGCCCGGATA TCGCCTTGGT GGCATGGACG AAGCGCAAGG CGCTCGACCT GCCGCCATTC
CTGTTTCTGG GCGATCCAGC CGTGCTGAAA AGCCGTGCCA GACTGCTGGG GCTGGACATT
CCCTTCAAGG AAACCGGGGC AGAGGATGCG GCAGAGGTTT TCGAAACCGC GTTTCCGGTT
CTGCCGATCC CTGTTGGTAT CGATGTCGTG GCTGGCGAGC CGCATGTTGC AACCGCGCGC
TCGACGATAA CAGCCATTGA AATGGCGGTT GATTTTTGCC TGAAAGGTCA GGCTGGCTCG
GTCGTGACCA ATCCCGTCGC CAAATCCGTG CTCTATGAGG GCGGATTTGG TTTTCCAGGT
CATACCGAGT TTTTGGCCGC TCTTGCCGAA AAGGCCACAG GCCACCCGGT CATGCCTGTG
ATGATGCTGG CCGGAGCGCA ATTGCGGGCA ATTCCGGTCA CAATCCACAT GCCGCTAAGC
GCGGTGGCGC CAGCGCTGAG CGAAGAGCTG ATCATTCGCA CCTGTCGCAT CACCCATGCC
GACCTGCGCG ACAAATTCGG CATTGCCGAG CCTCGGCTCG CCGTTGCCGG GCTCAATCCC
CATGCTGGCG AAGGCGGCGC GATGGGCCGC GAAGACGAAG AGATCATCGC ACCGGCTCTC
AAGATCCTGC GCGCAGAGGG AATCGATGCT TTCGGGCCGC TGCCTGCCGA CACCATGTTT
CATGAGGAAG CGCGCCGCCG CTACGATGTC GCTGTCTGCA TGTATCACGA TCAGGCGCTG
ATACCGGTCA AGACCCTGGA TTTCGACGGT TCGGTCAACG TCACGCTCGG CCTGCCCTTC
GTGCGCACCT CGCCCGACCA TGGCACCGCG TTCGGCCTCG CCGGCCAGGG TATTGCCCGT
GAAAACAGCC TGGTCGCGGC GCTACGCCTG GCGGTGGATA TCAGCCGCAA GGCCGCCCTC
ACCCACGCAT TGGCCGTCTG A
|
|---|
| Protein sequence | MSDTSQRLPL ALTQGDPAGI GPDIALVAWT KRKALDLPPF LFLGDPAVLK SRARLLGLDI
PFKETGAEDA AEVFETAFPV LPIPVGIDVV AGEPHVATAR STITAIEMAV DFCLKGQAGS
VVTNPVAKSV LYEGGFGFPG HTEFLAALAE KATGHPVMPV MMLAGAQLRA IPVTIHMPLS
AVAPALSEEL IIRTCRITHA DLRDKFGIAE PRLAVAGLNP HAGEGGAMGR EDEEIIAPAL
KILRAEGIDA FGPLPADTMF HEEARRRYDV AVCMYHDQAL IPVKTLDFDG SVNVTLGLPF
VRTSPDHGTA FGLAGQGIAR ENSLVAALRL AVDISRKAAL THALAV
|
|---|
| |