| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1527 |
|---|
| Symbol | fabD |
|---|
| ID | 7386484 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 1277403 |
|---|
| End bp | 1278347 |
|---|
| Gene Length | 945 bp |
|---|
| Protein Length | 314 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 643650892 |
|---|
| Product | malonyl CoA-acyl carrier protein transacylase |
|---|
| Protein accession | YP_002549097 |
|---|
| Protein GI | 222148140 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0331] (acyl-carrier-protein) S-malonyltransferase |
|---|
| TIGRFAM ID | [TIGR00128] malonyl CoA-acyl carrier protein transacylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.424584 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGTGTCG CATTTACATT TCCGGGCCAG GGCAGCCAGG TCGTCGGAAT GGGCAAGGAT
CTGGCTGAGG CTTTTCCGGA AGCCCGCACG GTTTTTGAAG AAGTGGACGA TGCACTCGGC
GAGAAATTGT CGGACGTGAT GTGGAACGGG TCCGTTGAGG ATCTGACCCT GACGGCCAAT
GCCCAGCCGG CGCTGATGGC TGTGTCCATC GCGGTGCTGC GGGTCATGGA AGCGCGTGGT
TTTTCGCTGG CGCGCAAAGT GTCCTATGTC GCGGGCCACT CGCTCGGTGA ATATTCGGCG
CTCTGTGCCG CTGGTACGTT CAGCCTTGCC GACACCGCTC GCCTGTTGCG CATTCGTGGC
AATGCCATGC AGGCCGCCGT TCCGGTCGGT GCCGGGGCCA TGGCGGCAAT CCTGGGTCTT
GAGCATGGCG ACGTCGAAAA GGTCTGCAAG GCGGCCAGCA GCGACGGCCC GGTGCAGATC
GCCAATGACA ATGGCGGCGG CCAGCTGGTG ATTTCCGGCG CGAAGGCTGC CGTGGAAAAG
GCATCAGTGC TTGCGATGGA AAAAGGCGCC AAGCGCGCCA TCATGCTGCC AGTCTCGGCG
CCATTCCATT CGACGCTGAT GGGTCCGGCA GCCGATGCCA TGGCTCAGGC TTTGGCGACG
GTCGAGATGA AGGCGCCTGT CGTGCCGTTG ATCGCCAATG TCGTCGCCGT TCCGGTAAGC
GACCCGAACG AGATCCGCCG CCTGTTGGTG GAGCAGGTGA CGGGGCAGGT GCGCTGGCGT
GAAACGGTAG AATGGTTCAG CCACAATGCC GTCTCGGTTC TCTATGAGAT TGGCGCAGGC
AAAGTGCTGA GCGGCCTGGT GCGGCGCATC GACAAGAATA TCACCGGCAC GGCGGTCGGT
TCGCCAGCTG ATATCGAAGC GGCCCTGACC GCGTTGATGT CTTAA
|
|---|
| Protein sequence | MGVAFTFPGQ GSQVVGMGKD LAEAFPEART VFEEVDDALG EKLSDVMWNG SVEDLTLTAN
AQPALMAVSI AVLRVMEARG FSLARKVSYV AGHSLGEYSA LCAAGTFSLA DTARLLRIRG
NAMQAAVPVG AGAMAAILGL EHGDVEKVCK AASSDGPVQI ANDNGGGQLV ISGAKAAVEK
ASVLAMEKGA KRAIMLPVSA PFHSTLMGPA ADAMAQALAT VEMKAPVVPL IANVVAVPVS
DPNEIRRLLV EQVTGQVRWR ETVEWFSHNA VSVLYEIGAG KVLSGLVRRI DKNITGTAVG
SPADIEAALT ALMS
|
|---|
| |