Gene Avi_1520 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_1520 
SymbolrpsF 
ID7386480 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp1272775 
End bp1273236 
Gene Length462 bp 
Protein Length153 aa 
Translation table11 
GC content59% 
IMG OID643650888 
Product30S ribosomal protein S6 
Protein accessionYP_002549093 
Protein GI222148136 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0360] Ribosomal protein S6 
TIGRFAM ID[TIGR00166] ribosomal protein S6 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.162884 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTCTTT ATGAACATGT ATTCCTTGCC CGGCAGGATA TGTCCGCACA GCAGGTTGAT 
GCCCTCGTAG AACAGTACAA GGGTGTTATC GAAGCAAATG GCGGCAAAGT CGGGCGCGTA
GAAAACTGGG GCCTGAAGTC CCTGACCTAC CGCATCAACA AGAACCGCAA GGCTCACTAC
GCTCTGATGG ACATCGATGC TCCGGCTGCT GCCGTGCACG AAGTCGAGCG TCAGATGCGC
ATCAACGAAG ACGTTCTTCG TTACATGACC ATCGCCGTTG AAGCCCACGA AGAAGGCCCG
TCTGCCATGA TGCAGAAGCG CGACCGCGAC GACCGTCCGC GCCGCGATGG CGACCGTCCG
GATCGTGGCG ACCGCGGTGA TCGTGGTGAT CGTGGTCCCC GTGAAGGTGG CCGTGAAAGC
TTTGGTGATC GTCCGCGCCG TCCGCGCGAA GATCGCGCAT AA
 
Protein sequence
MALYEHVFLA RQDMSAQQVD ALVEQYKGVI EANGGKVGRV ENWGLKSLTY RINKNRKAHY 
ALMDIDAPAA AVHEVERQMR INEDVLRYMT IAVEAHEEGP SAMMQKRDRD DRPRRDGDRP
DRGDRGDRGD RGPREGGRES FGDRPRRPRE DRA