Gene Avi_1479 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_1479 
Symbolpip 
ID7386449 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp1241822 
End bp1242787 
Gene Length966 bp 
Protein Length321 aa 
Translation table11 
GC content58% 
IMG OID643650857 
Productproline iminopeptidase 
Protein accessionYP_002549062 
Protein GI222148105 
COG category[R] General function prediction only 
COG ID[COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)  
TIGRFAM ID[TIGR01249] proline iminopeptidase, Neisseria-type subfamily 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.293243 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTGAGT TGCGCACCCT CTACCCTGAG ATCGAACCTT TCGAGACCGG CTTTCTCGAT 
GTCGGCGATG GCCACGTCAT CCATTGGGAG CGGGTCGGCA CCAGGGGTGC CAAGCCTGCG
GTGTTTCTGC ACGGCGGACC GGGTGGCGGC ATCAATCCCA ACCAGAGGCG GGTGTTCGAC
CCCGCTCTTT ATGATGTAGT CCTGTTCGAT CAACGCGGCT GTGGAAAATC CACGCCGCAT
GCCCATCTGG ACGCCAACAC CACCTGGCAT CTGGTCGCCG ATATCGAGCG CTTGCGTGAC
ATGATCGGCG TCGAAAAATG GCTGGTATTT GGCGGCTCCT GGGGTTCGAC GCTGGCGCTG
GCCTATGCGC AGACCTATCC CGAGCGGGTC AGCGAACTGG TGCTGCGCGG CATCTACACG
CTGACCAAGG CGGAGCTGGA CTGGTATTAT CAGTTCGGAG TCTCCGAGAT GTATCCTGAT
CGTTGGGAGC ATTTCATCGC GCCCATTCCG CTTGAAGAGC GCCATGACAT GATTTCCGCC
TATCATCGCC GTCTGACCGG AGAGGACAAG GAAGTGCAGC TCGCCTGCGC CCGCGCCTGG
AGCCAGTGGG AAGGCGCGAC GATTTCGTTG ATCCCCAATT TGCAACAGAT CGAAAATTTC
GGCGAGGACC ATTACGCCAT CGCCTTTGCC CGTCTGGAAA ACCATTTTTT CATGAACCGG
ATCTGGATGG AAGACGGTCA ATTGCTGCGC GATGCCCATA AGCTCAAAGG CATTCCGGGC
GTGATCGTGC ATGGGCGCTA TGACATGCCC TGCCCGCTGC GCTATGCATG GGAATTGTCC
AAGCTCTGGC CGGATGCCGA TTTGCACATT GTCGAGGCTG CGGGCCATGC CATGAGCGAA
CCGGGTATTC TCGACCAATT GATCCGTGCC ACTGACCGTT TTGCCGGAAA AATCCAAAAC
ACATAA
 
Protein sequence
MTELRTLYPE IEPFETGFLD VGDGHVIHWE RVGTRGAKPA VFLHGGPGGG INPNQRRVFD 
PALYDVVLFD QRGCGKSTPH AHLDANTTWH LVADIERLRD MIGVEKWLVF GGSWGSTLAL
AYAQTYPERV SELVLRGIYT LTKAELDWYY QFGVSEMYPD RWEHFIAPIP LEERHDMISA
YHRRLTGEDK EVQLACARAW SQWEGATISL IPNLQQIENF GEDHYAIAFA RLENHFFMNR
IWMEDGQLLR DAHKLKGIPG VIVHGRYDMP CPLRYAWELS KLWPDADLHI VEAAGHAMSE
PGILDQLIRA TDRFAGKIQN T