| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1477 |
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| Symbol | |
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| ID | 7386448 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 1240182 |
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| End bp | 1241798 |
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| Gene Length | 1617 bp |
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| Protein Length | 538 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643650856 |
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| Product | putative alpha-isopropylmalate/homocitrate synthase family transferase |
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| Protein accession | YP_002549061 |
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| Protein GI | 222148104 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
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| TIGRFAM ID | [TIGR00977] 2-isopropylmalate synthase/homocitrate synthase family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.583378 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCGCG AAAAAATCAC CCTGTTCGAC ACCACCCTGC GCGATGGTCA GCAGACGCCC
GGCATCGATT TTTCCGTGGA AGACAAGATT GCCATTGCCG CCATGCTGGA TAATTTCGGG
CTGGATTATG TCGAAGGCGG CTATCCCGGT GCCAATCCGA CCGACACGGC ATTTTTCTCA
AAAAAACGCA CCAGCCGCGC CCGCTTCACG GCGTTTGGCA TGACCAAACG CGCCGGAATT
TCCGCCTCCA ACGATCCGGG CCTGAGCCAG CTTTTGCAAT CGAAAAGCGA TGCCATCTGT
CTTGTGGCGA AAAGCTGGGA TTACCATGTG ACAGTGGCGC TTGGCTGCAC CAATGAGGAA
AACCTCGACT CCATCCGCGA CAGTGTCAAG GCCGTGGTGG CTGCGGGCAA GGAAGCGCTG
GTGGATTGCG AGCATTTCTT TGATGGCTAC AAGGCCAATC CCGACTATGC CGTGGCCTGC
GCCAAAACCG CCTATGAGGC CGGTGCGCGC TGGGTGGTGC TGTGCGACAC CAATGGCGGC
ACCCAGCCGC CGGAAATCCG CACGATCATT GCCAGCCTGA TCGCGGCAGG CGTTCCCGGC
ACGTCGCTTG GCATCCATGC TCATAACGAT ACCGGCCAGG CCGTTGCCAA TTCGCTGGCC
GCCGTGGAAG CCGGTGTGCG CCAGATTCAA GGCACCCTGA ACGGCATTGG CGAGCGCTGC
GGCAATGCCG ATCTGACCAC CATCATCCCG ACGCTCTGTC TGAAGAAGAC CTATGCCGAC
CGGTTCGAGA CTGCCATTGA TCTCGAAAAG CTGGTGGAAT TGACCCGCCT CTCCCATGCC
TTCGATGAGC TGTTGAACCG CTCTCCCAAC CATCAGGCTC CCTATGTCGG GGCGTCTGCC
TTTGCCACCA AGGCTGGTAT CCATGCCTCG GCGCTGTTGA AGGACCCGAA AACCTATGAG
CATGTAGAGC CGGGCCTTGT GGGCAATTTT CGCAAGGTCA TGGTCTCCGA TCAGGGCGGC
AAGGCCAATT TCATCAACGA GTTGAAACGC CGCGGCATCA CGGTTGCCAA GGACGATCCG
AAGCTGGACC GGCTGATCGA GATCGTCAAG CAGCGTGAAG CGACAGGCTA TGCCTATGAA
GGCGCCGATG GCAGTTTCGA GCTCTTGGCG CATCGCACCC TCGGCACCGT GCCGGAATTT
TTCGCCGTCG AAAGCTTCCG GGTGATGATC GAACGCCGCT TCGACAGCAA TGGCAACTTG
AAAACCGTGT CAGAAGCGGT GGTGAAAATG GTGATCGACG GGCAGACGGT GATGTCGGTC
GCCGAAGGTG ACGGCCCGGT CAACGCGCTT GACATTGCCC TTCGCAAGGA TCTCGGCAAA
TTCCAAAGCG AAATAAAGGA TCTGGAACTG GCTGATTTCA AGGTCCGTAT CCTCAACGGT
GGCACCGAGG CCATCACCCG CGTGCTGATA GAATCGACTG ATGCCAGCGG CGCCCGCTGG
TGGACGGTGG GTGTCTCCGA AAACATCATC GATGCCTCGT TCCAGGCGCT GATGGACGCT
ATCGTCTACA AGCTGATGAA AAACCGCGAA CTGGCTGGAC GGATCGCTGC GGAATAA
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| Protein sequence | MSREKITLFD TTLRDGQQTP GIDFSVEDKI AIAAMLDNFG LDYVEGGYPG ANPTDTAFFS
KKRTSRARFT AFGMTKRAGI SASNDPGLSQ LLQSKSDAIC LVAKSWDYHV TVALGCTNEE
NLDSIRDSVK AVVAAGKEAL VDCEHFFDGY KANPDYAVAC AKTAYEAGAR WVVLCDTNGG
TQPPEIRTII ASLIAAGVPG TSLGIHAHND TGQAVANSLA AVEAGVRQIQ GTLNGIGERC
GNADLTTIIP TLCLKKTYAD RFETAIDLEK LVELTRLSHA FDELLNRSPN HQAPYVGASA
FATKAGIHAS ALLKDPKTYE HVEPGLVGNF RKVMVSDQGG KANFINELKR RGITVAKDDP
KLDRLIEIVK QREATGYAYE GADGSFELLA HRTLGTVPEF FAVESFRVMI ERRFDSNGNL
KTVSEAVVKM VIDGQTVMSV AEGDGPVNAL DIALRKDLGK FQSEIKDLEL ADFKVRILNG
GTEAITRVLI ESTDASGARW WTVGVSENII DASFQALMDA IVYKLMKNRE LAGRIAAE
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