| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1474 |
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| Symbol | |
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| ID | 7386445 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 1236163 |
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| End bp | 1238154 |
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| Gene Length | 1992 bp |
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| Protein Length | 663 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643650853 |
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| Product | hypothetical protein |
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| Protein accession | YP_002549058 |
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| Protein GI | 222148101 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1652] Uncharacterized protein containing LysM domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.234073 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAACC GTGCCGGTTG GCTGGCTCTC GGCGTGCTTG CCATTGCGAC AGTATTGATG
GTGTTTTTCG TGCTTCCGCA AATTGGCGGC ACAAAGAAGA CGGCAGAAAC ACCTGCTGCC
CCGGCTGAAC AGGCGGCAGC GCCCGAAGCG TCCGGGCCTT CCTCACCCAC GCCTGCCCCC
GATGGCCAGG CCGCCGCCAA GATGCAGCGT CTGACCAAGG CCGCAGAGCA ATCGGTGGCC
GCTTTGGAAA ATCTGTTTGC CGATCAGAAA ACCCCGGCAC CCGAACTTTA CGCCACAGCC
CGTATTGCTG CATTGACAGC CCTGAAAGCC CTATCGGATG CCGATCTTCC CGCCGGGATC
GAAGCAGGCC TTGTAGACAG CCTCACCAAG GCAAAGGCCT CGGCTGCCCA TGCCTTGCAG
TTGATCGCCA AACTGCCCGC CTCCCCGCAG GATGCCGCCG CCATGATCGC CAATATCGGT
CGGGCCATGC GCGGTGAACC GGAAGTGGCT ATCGATCCAG ACATGCCGCG TTTTGATGTG
CTGCGCGTTG AAAAAGACGG CTCGACTGTG ATCGCCGGCA GCGCGGCACC GGGTGCCAAG
GTCGAGGTCC ATGACGGCTC CAGCAATATT GCCAGCGCCA CCGCCTCTCC AAACGGTGAT
TTCGCCATCG TACTCGACAA GCCTCTGTCG CCCGGCGATC ATTCTCTGGA TTTGAAAGCC
ACGACCAAGG AAGGCAAGAC CATCGGGTCT GAGGAGCAAG CCACGGTTTC CGTCCCGGCC
GATCCATCCG GTGACGTGCT GGCCATGGTG ACCAAGCCCG GCGAAGCCAG CCGGCTGATC
AGTGGCCCGC AACAGGATCA AGTCTCGCCA AAGGATCAGA GCCAGCCACA GGCTCCTGAA
CAGATCAATG GCGTCGACAA GCAGGGCCGC GTCGCCGCAG CCACGCCTTC TACACCGATG
ACATCCCCCG GGTCTGCGTC CAGCCCATCC CTGTCCGCTG CCGATTTGCA GATTACCGCG
GTCGAGCTTG AAGGCGACAA GATTTTCGTG GCAGGCAACG CCCAGAAGGG CCGCACCGTG
ACCGCCTATG CCGATGGCAA GCAGATCGGC TCGGCGGATG TCGACCAGAA GGGGCATTTC
GTGGTCGAAG GCCAGATGCC GCTTTCCATC GGCCAGCATA TCATCAGCGT CGATCTGAAG
GATGCCAATG GCAGGGTCAC ACTGCGCGCG TCGGTGCCGT TCAACCGGCC GGAAGGCGAT
CAGGTTGCGG TTGTCGCACC GGAAGCCCAG CCCGGCGGCG CCGGCAGCAC CGTCAGCCCG
GCCACCGTCG ATAGCAACCT GTTTGATCGG CAGCGCGATA CACTGGCCAA GTCCTTCACG
CTGCTTAGCA ACCTGTTTGC CGATGGCAAG ACACCGACGC TGGAAAGCCT GGCGGCATCG
CGTTCGGCGC TGGAATTTGC CCTGAAAGCA GTTGCGGATT TCCGCCCGAC CCCCAGCACG
GACCAGACCG CCAGCGCCTT CATGGCGCGC ATGGCAGACC AGGCTGACAA GGCACTCGTG
GTCCTCAAGC AAGTGCCGAC GGCGTCGGTC ACGGCGATGG CCAATGCCTT GCCGACCCTC
AAGTCGCTTG TCGATGCGGC GCTGGAACCC ATGCCGGCCA AAATTGCCGC TGCGCAAGCC
GCAGCGACGC AAAACCCGGC ACCGACCTTG GCGCCAGCCG ATGGTACATC GCCGCCGGTG
CTGAGCCAGG CGCCGCTGAC CGAAAGCAAG AATGCGGTGA TCATCCGCCG GGGCGATACG
CTCTGGCAGA TTTCCCGGCG AGTCTATGGC CAGGGCGTGC GTTACACGAC GATCTATGTC
GCCAATGCCG AACAGATCAG CAATCCCGAC CTGATCGAGC CGGGCCAGAC CTTCACCGTG
CCCGATCAAT CCATGCCGGA TGACGAAGCC GAAAAAATCC ATCGTAAATG GATGCTGGAG
CACAAGCGAT AG
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| Protein sequence | MKNRAGWLAL GVLAIATVLM VFFVLPQIGG TKKTAETPAA PAEQAAAPEA SGPSSPTPAP
DGQAAAKMQR LTKAAEQSVA ALENLFADQK TPAPELYATA RIAALTALKA LSDADLPAGI
EAGLVDSLTK AKASAAHALQ LIAKLPASPQ DAAAMIANIG RAMRGEPEVA IDPDMPRFDV
LRVEKDGSTV IAGSAAPGAK VEVHDGSSNI ASATASPNGD FAIVLDKPLS PGDHSLDLKA
TTKEGKTIGS EEQATVSVPA DPSGDVLAMV TKPGEASRLI SGPQQDQVSP KDQSQPQAPE
QINGVDKQGR VAAATPSTPM TSPGSASSPS LSAADLQITA VELEGDKIFV AGNAQKGRTV
TAYADGKQIG SADVDQKGHF VVEGQMPLSI GQHIISVDLK DANGRVTLRA SVPFNRPEGD
QVAVVAPEAQ PGGAGSTVSP ATVDSNLFDR QRDTLAKSFT LLSNLFADGK TPTLESLAAS
RSALEFALKA VADFRPTPST DQTASAFMAR MADQADKALV VLKQVPTASV TAMANALPTL
KSLVDAALEP MPAKIAAAQA AATQNPAPTL APADGTSPPV LSQAPLTESK NAVIIRRGDT
LWQISRRVYG QGVRYTTIYV ANAEQISNPD LIEPGQTFTV PDQSMPDDEA EKIHRKWMLE
HKR
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