| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1428 |
|---|
| Symbol | |
|---|
| ID | 7386413 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 1203287 |
|---|
| End bp | 1204333 |
|---|
| Gene Length | 1047 bp |
|---|
| Protein Length | 348 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643650820 |
|---|
| Product | outer membrane protein |
|---|
| Protein accession | YP_002549026 |
|---|
| Protein GI | 222148069 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0784054 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACATCA AGAGCCTTCT TCTCGGCTCC GCTGCGGCTC TCGCAGCAGT ATCCGGCGCC
CAGGCAGCAG ACGCTATCGT TGCTGCTGCT CCGGAACCAG CTGAATACGT CCGCGTTTGC
GACGCCTTCG GCACTGGCTA CTTCTACATC CCCGGCACCG AAACCTGCCT TCGCGTTAAG
GGCTATGTCC GTTTCGAAGT TCAGGGCAAC AGCAACGACG GCGACTCGTC CTGGTCGGGT
AACCGCGACT GGAACGCTCG TACTCGTGGC CTCGTCACTT TCGACGCCAA GAACGACTCT
GAAATCGGCA CGATCGGTTC CACCATCACT GTCCGCACCT GGGCTGATGA AAACGGCGGC
AGCCTCGAGC TGGACGAAGC CTTCATCACT GTTGCTGGCT TCCAGATCGG TGAATTCTAC
AACTACTTCG ATACGGGTCT CTCCGGCGAA ACCGACGACC TCGGCTCGAA CCGTCTGAAC
TCGATCGCTT ACAACTACAA GTCCGACACC TTCTTCGCTG GCATCGCTGT CGACGAACTG
ACCGGCTACT ACAGCCGTTC GCGTGACCTC AGCCAGGCTG ATGCTTACGG CCAGAACAAG
CGCGTTGGCA TTGAAGGCCA GGTTGGCGGT TCTTTCGGTC CAGTAACAGC AACCCTGCTG
GGTGGCTGGG ACGCAGTTGC TAACGACGGC GCTGTTCGTC TGCTCGCAAC CGCAAACCTC
GGTCCTGGCG TCCTCGGCGT CGCTGGCCTG TACTCGACCG GCGTTTCCGC TTACTACGAC
AAGGCTGAGT GGACTGTTGC TGCCGAATAC GCAGCAAAGA TCACCGACAA GCTGACCCTG
ACTCCTGGCG TTCAGTACTT CGCTAACACC CAGGTTGACG GCAGCGGCGA TTACACCGGC
CGTGACATCT GGAAGGGTGG CTTGACGCTG GACTATAAGC TGGCTGAAGG CTTGACAACC
AAGGTTTCCG CTCAGTACCA GGATCATGCC TGGAGCAACA GCGACGACGT ATGGTCTGGC
TTCGTTCGCT TGCAGCGTTC GTTCTAA
|
|---|
| Protein sequence | MNIKSLLLGS AAALAAVSGA QAADAIVAAA PEPAEYVRVC DAFGTGYFYI PGTETCLRVK
GYVRFEVQGN SNDGDSSWSG NRDWNARTRG LVTFDAKNDS EIGTIGSTIT VRTWADENGG
SLELDEAFIT VAGFQIGEFY NYFDTGLSGE TDDLGSNRLN SIAYNYKSDT FFAGIAVDEL
TGYYSRSRDL SQADAYGQNK RVGIEGQVGG SFGPVTATLL GGWDAVANDG AVRLLATANL
GPGVLGVAGL YSTGVSAYYD KAEWTVAAEY AAKITDKLTL TPGVQYFANT QVDGSGDYTG
RDIWKGGLTL DYKLAEGLTT KVSAQYQDHA WSNSDDVWSG FVRLQRSF
|
|---|
| |